G72606


Basic Information

Item Value
gene id G72606
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9977975 ~ 9978422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97912
AGTATCGACTGTGACCACAAGGAGGCATCATTGTTGTACTTCATATACATCCATGGATATGGCCTACATGTTACACTAgggcagtgtttctcaatcctggCCTGGATGCCCCTCTGCTCTGCACATTCATTACTTTTTCTTTAACTAATTCAACCTATTTCAACTAATCACACCTAATTCAGCTATTTAACAAGCCCTTCCAGTCATGCAGGGGTGTTTTAAAGCAGATAATCtaaaatgttctgaaaatattgattgaaaacagaaaagagttaacattttaacagccaCAAACTCATTTCACTTACAAATTGGGTCGCACCCTAGATCATGGACCTTAGCCTACCAAAGGTATCCGCTGTCTTGCTGTCACACTTTTTGCATAGGCAATTCTATGggcctttttgttttttagattttgtGATGGTATAACAATTCTTAATTTTAC

Function

GO:

id name namespace
GO:0015849 organic acid transport biological_process
GO:0046942 carboxylic acid transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97912 True 448 lncRNA 0.38 1 9977975 9978422

Neighbor

gene id symbol gene type direction distance location
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding upstream 151 9974224 ~ 9977824 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding upstream 20447 9910406 ~ 9957528 (+)
tbc1d2 tbc1d2 coding upstream 124918 9827287 ~ 9853057 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding upstream 178512 9791271 ~ 9799463 (+)
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding upstream 629548 9276546 ~ 9348427 (+)
irf7 NA coding downstream 86994 10065416 ~ 10073101 (+)
hras hras,rash,LOC107562835,LOC103357265 coding downstream 207315 10185737 ~ 10206122 (+)
LOC103047796 NA coding downstream 229287 10207709 ~ 10212496 (+)
tsg101 tsg101,tsg101a coding downstream 234141 10212563 ~ 10221827 (+)
igsf22 igsf22 coding downstream 997299 10975721 ~ 11000591 (+)
G72514 NA non-coding upstream 204376 9773199 ~ 9773599 (+)
G72503 NA non-coding upstream 256093 9720971 ~ 9721882 (+)
G72500 NA non-coding upstream 260060 9717673 ~ 9717915 (+)
G72496 NA non-coding upstream 267761 9708437 ~ 9710214 (+)
G72488 NA non-coding upstream 278977 9692669 ~ 9698998 (+)
G72612 NA non-coding downstream 50061 10028483 ~ 10028846 (+)
G72615 NA non-coding downstream 79061 10057483 ~ 10057818 (+)
G72617 NA non-coding downstream 80263 10058685 ~ 10058886 (+)
LOC111193092 NA non-coding downstream 118837 10097259 ~ 10099145 (+)
G72752 NA non-coding downstream 819570 10797992 ~ 10798845 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 7933 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 828556 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 941949 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 3092434 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 3439181 6525641 ~ 6538794 (+)
G72621 NA other downstream 100157 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 294497 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 2893062 12871484 ~ 12897931 (+)
G73533 NA other downstream 4670407 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 4913112 14891534 ~ 14921003 (+)

Expression


Co-expression Network