G72612


Basic Information

Item Value
gene id G72612
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10028483 ~ 10028846 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97918
ACTAACTTTATTGTCTTTCAATGACATTCAGTGACAAACTGTATGATCTTTTCagaatttctttattaacaggctctctgctcatttaaagcaataaaaagtgCTCAGAGAGTGAAACCACTTATATTAGCACAGTCTAAAACCCAGCCAGGTGGATAAAACTGctatgaaactacatcatggtgagccctctaaactgaacatctaattaacatagccacgccccacagacagttgttttttttttaggtatattttcttttacataaaagaaagaaaaaaacgttttatttctatggttattttctgtattttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97918 True 318 lncRNA 0.32 2 10028483 10028846

Neighbor

gene id symbol gene type direction distance location
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding upstream 50659 9974224 ~ 9977824 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding upstream 70955 9910406 ~ 9957528 (+)
tbc1d2 tbc1d2 coding upstream 175426 9827287 ~ 9853057 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding upstream 229020 9791271 ~ 9799463 (+)
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding upstream 680056 9276546 ~ 9348427 (+)
irf7 NA coding downstream 36570 10065416 ~ 10073101 (+)
hras hras,rash,LOC107562835,LOC103357265 coding downstream 156891 10185737 ~ 10206122 (+)
LOC103047796 NA coding downstream 178863 10207709 ~ 10212496 (+)
tsg101 tsg101,tsg101a coding downstream 183717 10212563 ~ 10221827 (+)
igsf22 igsf22 coding downstream 946875 10975721 ~ 11000591 (+)
G72606 NA non-coding upstream 50061 9977975 ~ 9978422 (+)
G72514 NA non-coding upstream 254884 9773199 ~ 9773599 (+)
G72503 NA non-coding upstream 306601 9720971 ~ 9721882 (+)
G72500 NA non-coding upstream 310568 9717673 ~ 9717915 (+)
G72496 NA non-coding upstream 318269 9708437 ~ 9710214 (+)
G72615 NA non-coding downstream 28637 10057483 ~ 10057818 (+)
G72617 NA non-coding downstream 29839 10058685 ~ 10058886 (+)
LOC111193092 NA non-coding downstream 68413 10097259 ~ 10099145 (+)
G72752 NA non-coding downstream 769146 10797992 ~ 10798845 (+)
G72753 NA non-coding downstream 770700 10799546 ~ 10801772 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 58441 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 879064 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 992457 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 3142942 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 3489689 6525641 ~ 6538794 (+)
G72621 NA other downstream 49733 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 244073 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 2842638 12871484 ~ 12897931 (+)
G73533 NA other downstream 4619983 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 4862688 14891534 ~ 14921003 (+)

Expression


Co-expression Network