LOC103037069 (LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621)


Basic Information

Item Value
gene id LOC103037069
gene name LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10051952 ~ 10054034 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97949
AGTCGCCGCACTCCTCCTACTCCTCGGACGAAGGCAGCTACGAGCAGCAGCTGAGCTCCGAAGAACAGGAGCTGCTGGACTTTACCACGTGGTTCGACAGATACTGAGCGGGTAGGGCTGAGCCGCGTCCCGATAACCACTCTGAGCTGCGTGCGGAAAATAGCTCCACTAGTGCACTCGGTCActcccttcctctctccctcacaAAAAGCGCCGCAGACTGTGCCGTTGTTCACTACGGAGAGAGCCAGACAGCGGAGGGCGAGGCGAAGATTTGGGACACAGCACTCCGAGACGCTCTGCGCCGGTGTCATAGCAACCAGCAACAAGCATCAGCGAACTGACTGAGAACAGAACTAGCTAGCATGCTAAtttgctagctaactagctgtgacaaaagtgtcaaaaaaactgacaaaaagagAATTTGTGcacataaaaagagaaaaacgtGTCAGCTCAGTTTAAACAATCCAAGCTACCTTTTCCTAATTAGCGAACTAGCTAATTCTATGCTATGTTTGTATACCATTATGCTGTCTTGTTAGGGTAACCTTAGCTAGCCAGCAAGCAAGTGTTGAGGATTggaacaccaccaccatgacCACACACTTCCTAGTGCACTACTTAGGTAGTGATGAATCTGACACAGCCTTCACCGTCAGCATCCGCAGCTTCTGGCTGGCTGTCCCAGTGTCTCTGCTCTGAGATAAACgaggattaaaaaaagaaaaaaacaagacttcTTTCAACTCCGTTCAAAGATTTAAGGACACAAAGGGAGACTCTGGAAGCGACTGGAGGAAAAGATTTGAGCTGAAAAGTGCAATTATGGacttatgtatgtatgtgttgcTGATAGGGCTGTTTAGAGAGTGTTGTTTTGAAGTTGCTGACGTGACCATTCCTAAAAAGGGGACTTCTGTATTAtaagctgtattttttaatataaagattttatttttgtatgccgagctaagcaaaacaaaaaaggttCACTGCCTCTTCTGTGACAATGACCATGTGGTAGAATATGAGTTGTTAGTCAGAAGGTAACAATAATGTTGTTAATGCTCTTAACACTGTTTAGGGTTTTGTTCAGTAGAACATATTATTGATCAGACATCTGGCTCCTCATTGGCTGGACGAGGAGATGTTTAAAAGTGTATGCACTTGTTCTCAGTGTTCTGTAGACTACGGAAAATGTACATATCCGCGATTTTAACAgatata
>XM_015608595.2
CGCGCAGCGGGGGCGGGGTCTCGCGCAGGAGCGTGCGTCGCTTTAAAGGGGGTGGGGTGGCGCGCGCGTGTTGAAAAAGCCCGGTGCTGCCAAAGTTTGTATCAGATCGCTCCGGTGTGGGTGCGCGAGGGGGGCCAGGAAAGACTTAACCTAGAGCTTTTGGACTCGCGACAGCCAGGAACGGGCGCGCACGCGAAACACACGAGTCTGGGTTTGGGACACGAGTCTAAAGAAAAGTCTAAGGAAAGACTTTGGTGGCGcgagcatcatcatcatcacctccACCGTGGCGACATGGAGACCATCAGCACCACCAGCACGACCACCTGCAGCACCACTGCAGCCACTATCATCGCcgctgctgctccagccaccTGCCCGTTTGCGCACGAGCGCGCCACAGCAGCAGCACTTGTCTCCAGCGCGACCAGCAGCAGAGCTCTCAAGCGACCCCCGCGCTCCAGCTCGCCGGAGCTCCTGCGCTGCAAGCGGCGGCTCACGTTTAGCGGGCTGGGCTACAGCATCCCGCAGCAGCAGCCCGTGGCCGTGGCGCGGCGCAACGAGCGCGAGAGGAACCGCGTCAAGCAGGTCAACATGGGCTTCCAGACCCTGCGGCAGCACGTGCCCAACGGCGCCGCCAACAAGAAGATGAGCAAGGTGGAAACACTGCGCTCCGCCGTGGAGTACATCCGCGCGCTGCAGCAGCTGCTGGACGAGCACGACGCCATCTCCGCCGCCTTCCGCTGCGGCGTGCCGTCCCCCAGCCTATCCCACAGCTACTCCGCTGAGCCGGAGTCGCCGCACTCCTCCTACTCCTCGGACGAAGGCAGCTACGAGCAGCAGCTGAGCTCCGAAGAACAGGAGCTGCTGGACTTTACCACGTGGTTCGACAGATACTGAGCGGGTAGGGCTGAGCCGCGTCCCGATAACCACTCTGAGCTGCGTGCGGAAAATAGCTCCACTAGTGCACTCGGTCActcccttcctctctccctcacaAAAAGCGCCGCAGACTGTGCCGTTGTTCACTACGGAGAGAGCCAGACAGCGGAGGGCGAGGCGAAGATTTGGGACACAGCACTCCGAGACGCTCTGCGCCGGTGTCATAGCAACCAGCAACAAGCATCAGCGAACTGACTGAGAACAGAACTAGCTAGCATGCTAAtttgctagctaactagctgtgacaaaagtgtcaaaaaaactgacaaaaagagAATTTGTGcacataaaaagagaaaaacgtGTCAGCTCAGTTTAAACAATCCAAGCTACCTTTTCCTAATTAGCGAACTAGCTAATTCTATGCTATGTTTGTATACCATTATGCTGTCTTGTTAGGGTAACCTTAGCTAGCCAGCAAGCAAGTGTTGAGGATTggaacaccaccaccatgacCACACACTTCCTAGTGCACTACTTAGGTAGTGATGAATCTGACACAGCCTTCACCGTCAGCATCCGCAGCTTCTGGCTGGCTGTCCCAGTGTCTCTGCTCTGAGATAAACgaggattaaaaaaagaaaaaaacaagacttcTTTCAACTCCGTTCAAAGATTTAAGGACACAAAGGGAGACTCTGGAAGCGACTGGAGGAAAAGATTTGAGCTGAAAAGTGCAATTATGGacttatgtatgtatgtgttgcTGATAGGGCTGTTTAGAGAGTGTTGTTTTGAAGTTGCTGACGTGACCATTCCTAAAAAGGGGACTTCTGTATTAtaagctgtattttttaatataaagattttatttttgtatgccgagctaagcaaaacaaaaaaggttCACTGCCTCTTCTGTGACAATGACCATGTGGTAGAATATGAGTTGTTAGTCAGAAGGTAACAATAATGTTGTTAATGCTCTTAACACTGTTTAGGGTTTTGTTCAGTAGAACATATTATTGATCAGACATCTGGCTCCTCATTGGCTGGACGAGGAGATGTTTAAAAGTGTATGCACTTGTTCTCAGTGTTCTGTAGACTACGGAAAATGTACATATCCGCGATTTTAACAgatatattttgtgtaaaaaaagtttttccttttttataaataaattcacTCTATTTATACATA

Function

NR:

description
achaete-scute homolog 1b-like

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97949 False 1233 lncRNA 0.45 1 10052009 10053241
XM_015608595.2 True 2083 mRNA 0.52 1 10051952 10054034

Neighbor

gene id symbol gene type direction distance location
LOC103036760 LOC108442475,LOC108275030 coding downstream 86233 9958520 ~ 9965719 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding downstream 426442 9544938 ~ 9625510 (-)
mfsd7 mfsd7 coding downstream 775451 9252866 ~ 9276501 (-)
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 1293824 8735077 ~ 8758128 (-)
enox2 enox2 coding downstream 1877058 7867201 ~ 8174894 (-)
phrf1 NA coding upstream 19195 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 112293 10166327 ~ 10184846 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding upstream 169084 10223118 ~ 10233197 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding upstream 576812 10630846 ~ 10717984 (-)
b4galnt4 b4galnt4,LOC108439245 coding upstream 671490 10725524 ~ 10965182 (-)
G72633 NA non-coding downstream 61445 9990196 ~ 9990507 (-)
G72596 LOC107751334,LOC107746538,LOC107680923,LOC107551454 non-coding downstream 94426 9955081 ~ 9957526 (-)
G72526 smu1,LOC108442464,LOC107082371,LOC106604632,LOC102223743,LOC108275199,LOC108243958 non-coding downstream 252549 9788501 ~ 9799403 (-)
G72524 NA non-coding downstream 268131 9783320 ~ 9783821 (-)
G72508 NA non-coding downstream 301260 9750450 ~ 9750692 (-)
G72689 tsg101,tsg101a non-coding upstream 158546 10212580 ~ 10221634 (-)
G72802 NA non-coding upstream 513870 10567904 ~ 10625271 (-)
G72803 NA non-coding upstream 517130 10571164 ~ 10627025 (-)
G72806 NA non-coding upstream 575163 10629197 ~ 10629486 (-)
G72807 NA non-coding upstream 575548 10629582 ~ 10629824 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 149059 9856399 ~ 9902893 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other downstream 227433 9801055 ~ 9824519 (-)
G72453 NA other downstream 826393 9188399 ~ 9225559 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other downstream 877643 9165878 ~ 9174309 (-)
G72336 NA other downstream 1406351 8639538 ~ 8645601 (-)
LOC103046452 rassf7 other upstream 47739 10101773 ~ 10162484 (-)
LOC111193093 NA other upstream 1170745 11224779 ~ 11225954 (-)
LOC111193052 NA other upstream 1466853 11520887 ~ 11545246 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 1994592 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 2494656 12548690 ~ 12564978 (-)

Expression


Co-expression Network