LOC111193092


Basic Information

Item Value
gene id LOC111193092
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10097259 ~ 10099145 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97959
GACTGAAGTTGAGCACCGCGCGCGCTTATAGAGCAAATCTCACTTTATTAATAAATCCCAGCGTTCGGACAAACTGTGCTACTTTTTGACCAGTTTGAGAAGCGGTGCCCTGCTGCCAGTCTGGACCCTTtatttggactgtgtgtgtttgattgatGCTATTTGACGGGGGAAAGTTGAGAGCGTGCTATGGCGCGCGCGTGCCTGCGTGCGTGTGCGAGTGAGATCTCTGAAAGCAGGTAAGCCACTGACTAACGCACATTGCGCCTCTTCTCCATTCCACTGTGCGTGTGACAGCGGCTAACCAGCTTTTGGACTTGGCTCTGGAGTTCTCCTGCGCTCCTGCTGACCGAGGCACTGCTTAAAGCCGCTCCCCGGATGGCCGAGGCCTTCTCCGCGCTGCTCCCTCCTCCTCTCCATTACTGTAGTACTTACTGTAAGTTAGCAGCCTACGTGCCACATGTCACAGTAACGCAGTAAGTCCACAGGCTGCCTATACGTCTCCCAGGGGTGGAGGGTGACGGGGCTTTCTGGAACAGGTAACCAGACCCTCATGTAACGTTTCCTTTTATGTAATAAACATTCTTTCCTGCTTTGActtgtgcagtgtgtagtgattaaaCTTTACATGTTTATTAACCCAATAACAGTTCAGCATTTTTGTCAGTGATATTGCATGCATagatcttgaggatttctattcaagcatcaattaaaaaggtttcatgtttaataagaaactttactgaaaatcataattgtaactgtattttaaattattaaaaaaaaaacattttatatcctCCAAAACTTTTGTTTCATTATGGTTGTCtaatttttatgtctatttttaaatttggggttgattcctgttactgatctggagagcttctccaagtgtccaaaGTTTTCAGAAGGTAAAAAACGTATTTTACTGCAgggaaaaagggttttgtatcatctACACTTGTAGCTCATGTACAGTCCAAGGCCTGTTAATAAACTTGAactcagttttaaaaaagtttaaaaaacttCAGCTCAGCACACAGTAGTAGTTAGCCAGCTAACCTACAGCAGCTGTAAGATACTTGTAACCATACTTATGCATTTTCTGCTTCTTCGACTTCATTAAAACTCACTTCATGTTTGAAAC
>XR_002650238.1
GTTGGGGTAGCGCAAGTGGACTGAAGTTGAGCACCGCGCGCGCTTATAGAGCAAATCTCACTTTATTAATAAATCCCAGCGTTCGGACAAACTGTGCTACTTTTTGACCAGTTTGAGAAGCGGTGCCCTGCTGCCAGTCTGGACCCTTtatttggactgtgtgtgtttgattgatGCTATTTGACGGGGGAAAGTTGAGAGCGTGCTATGGCGCGCGCGTGCCTGCGTGCGTGTGCGAGTGAGATCTCTGAAAGCAGGTAAGCCACTGACTAACGCACATTGCGCCTCTTCTCCATTCCACTGTGCGTGTGACAGCGGCTAACCAGCTTTTGGACTTGGCTCTGGAGTTCTCCTGCGCTCCTGCTGACCGAGGCACTGCTTAAAGCCGCTCCCCGGATGGCCGAGGCCTTCTCCGCGCTGCTCCCTCCTCCTCTCCATTACTGTAGTACTTACTGTAAGTTAGCAGCCTACGTGCCACATGTCACAGTAACGCAGTAAGTCCACAGGCTGCCTATACGTCTCCCAGGGGTGGAGGGTGACGGGGCTTTCTGGAACAGGTAACCAGACCCTCATGTAACGTTTCCTTTTATGTAATAAACATTCTTTCCTGCTTTGActtgtgcagtgtgtagtgattaaaCTTTACATGTTTATTAACCCAATAACAGTTCAGCATTTTTGTCAGTGATATTGCATGCATagatcttgaggatttctattcaagcatcaattaaaaaggtttcatgtttaataagaaactttactgaaaatcataattgtaactgtattttaaattattaaaaaaaaaacattttatatcctCCAAAACTTTTGTTTCATTATGGTTGTCtaatttttatgtctatttttaaatttggggttgattcctgttactgatctggagagcttctccaagtgtccaaaGTTTTCAGAAGGTAAAAAACGTATTTTACTGCAgggaaaaagggttttgtatcatctACACTTGTAGCTCATGTACAGTCCAAGGCCTGTTAATAAACTTGAactcagttttaaaaaagtttaaaaaacttCAGCTCAGCACACAGTAGTAGTTAGCCAGCTAACCTACAGCAGCTGTAAGATACTTGTAACCATACTTATGCATTTTCTGCTTCTTCGACTTCATTAAAACTCACTTCATGTTTGAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97959 False 1156 lncRNA 0.42 2 10097277 10099144
XR_002650238.1 True 1175 lncRNA 0.43 2 10097259 10099145

Neighbor

gene id symbol gene type direction distance location
irf7 NA coding upstream 24158 10065416 ~ 10073101 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding upstream 119435 9974224 ~ 9977824 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding upstream 139731 9910406 ~ 9957528 (+)
tbc1d2 tbc1d2 coding upstream 244202 9827287 ~ 9853057 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding upstream 297796 9791271 ~ 9799463 (+)
hras hras,rash,LOC107562835,LOC103357265 coding downstream 86592 10185737 ~ 10206122 (+)
LOC103047796 NA coding downstream 108564 10207709 ~ 10212496 (+)
tsg101 tsg101,tsg101a coding downstream 113418 10212563 ~ 10221827 (+)
igsf22 igsf22 coding downstream 876576 10975721 ~ 11000591 (+)
spty2d1 spty2d1 coding downstream 930341 11029486 ~ 11034828 (+)
G72617 NA non-coding upstream 38373 10058685 ~ 10058886 (+)
G72615 NA non-coding upstream 39441 10057483 ~ 10057818 (+)
G72612 NA non-coding upstream 68413 10028483 ~ 10028846 (+)
G72606 NA non-coding upstream 118837 9977975 ~ 9978422 (+)
G72514 NA non-coding upstream 323660 9773199 ~ 9773599 (+)
G72752 NA non-coding downstream 698847 10797992 ~ 10798845 (+)
G72753 NA non-coding downstream 700401 10799546 ~ 10801772 (+)
G72766 NA non-coding downstream 909404 11008549 ~ 11015607 (+)
G72871 NA non-coding downstream 1085521 11184666 ~ 11184981 (+)
G72875 NA non-coding downstream 1123629 11222774 ~ 11223004 (+)
G72621 NA other upstream 15119 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 127217 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 947840 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 1061233 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 3211718 6881587 ~ 6885541 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 173774 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 2772339 12871484 ~ 12897931 (+)
G73533 NA other downstream 4549684 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 4792389 14891534 ~ 14921003 (+)
svip svip other downstream 5473157 15572302 ~ 15577533 (+)

Expression


Co-expression Network