LOC103022150 (brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443)


Basic Information

Item Value
gene id LOC103022150
gene name brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10272919 ~ 10626964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98085
tcctctctctctctctctctctctctctctaccctCTACCCTCACAAGGAAAGAAAACGATTCCATCCGTCTCGCGAGCCCTAGTTTACAGACACACTAagagttcctttttttttttcttttttttcccaatttcttttttttttgggacaaaacaaaaacaaagcaataCCTGTTGTTGATCATCCTGTTTTATACAGTAGTCTTCTTCTACTGAACATTAAGGCTCCAGACGACGAGCGAGATGAACACTTATCTTTGGCCGCTGCAGAGCAGGAACAAACCATGAAGCTGTAAAACCCCTTGTAACATAACTGTGAGCAATTTCAGATTTCAGAGcggaaacaaactaaaaaaaaatacgaaaagaaaaaaaaatcaaacaaaacataaCAATAAACTCATTCACTTActaggaat
>TU98086
tcctctctctctctctctctctctctctctaccctCTACCCTCACAAGGAAAGAAAACGATTCCATCCGTCTCGCGAGCCCTAGTTTACAGACACACTAagagttcctttttttttttcttttttttcccaatttcttttttttttgggacaaaacaaaaacaaagcaataCCTGTTGTTGATCATCCTGTTTTATACAGTAGTCTTCTTCTACTGAACATTAAGGCTCCAGACGACGAGCGAGATGAACACTTATCTTTGGCCGCTGCAGAGCAGGAACAAACCATGAAGCTGTAAAACCCCTTGTAACATAACTGTGAGCAATTTCAGATTTCAGAGcggaaacaaactaaaaaaaaatacgaaaagaaaaaaaaatcaaacaaaacataaCAATAAACTCATTCACTTActaggaat
>XM_022671910.1
cggcaggcaggcaggcaggcagcgCCACTCGGGCTGGAGGGAAGCCGCGCTGCTCCTCGCTCCACGATGCTCCTCGGATCATAAACACTGCGCTCACCTGCTCCACAGGACAGGaggcaccaccaccaccaccacgacCACCGCAACTCTGCACTGCTGCGCTCACTGCCTCTCCGctcaggagaaagagagagagagagattaaaacacagaaatagagagagagaaagatagaaagagagacagagagagagagtaagcgaGTCACTGGCGAAGGGGATTGTGGAATAGACCAAAGCCTCCAGTCCTCCCTCCTCCAGTTTAAGAGGATTGCGCTGCTCTCCTGCTAACGACGCTCTCACCGCAGACATCCCACCGTCACGATGTCCTCGTGTGGGAAGGAAAACAGCGCTGCCCTGCACGCCAGTTACGTGGGACCGTACCGCTTGGAGAAGACCCTCGGGAAAGGGCAGACAGGTTTGGTGAAGCTCGGGGTGCACTGCGTAACATGTCAGAAAGTCGCCATAAAGATAGTCAACCGGGAGAAGCTCAGCGAGTCGGTTTTAATGAAGGTGGAGCGAGAAATCGCTATTCTCAAGCTAATAGAACACCCACACGTTTTAAAGTTGCACGATGTCTacgaaaataagaaatatttgtatCTGGTTTTAGAGCACGTGTCCGGGGGAGAATTGTTTGACTATTTGGTGAAAAAAGGAAGGTTAACACCCAAAGAGGCGCGCAAGTTCTTCAGACAGATCATGTCAGCTCTGGATTTCTGCCACAGTCACTCCATATGCCACAGGGACCTGAAGCCTGAGAACCTGCTGCTAGATGAGAAGAACAATATTAGGATAGCAGACTTCGGTATGGCCTCTCTGCAGGTTGGAGACAGCCTCCTGGAGACCAGCTGTGGTGTTAAATCGGGGGCTCTGCCATTTGATGACGATAATTTACGGAACTTGTTAGAAAAAGTGAAGTTGGGTGTGTTCCACATGCCACACTTCATTCCCCCAGACTGCCAGAACCTCCTACGAGGGATGATAGAGGTGGATGCCAGCAAACGACTAACGTTAGAACAGATCCAGAAGCACACGTGGTACATTGGAGGGAAGAATGAGCCTGAGCCTGAGCAGCCTGTGCCCAGGAAAGTGGCCATCAGAAGTCTGCCGTCAGCCGACGACATCGACCCGGATGTTCTGGAGAGCATGCACTCGCTCGGCTGCTTCCGGGACAAGAACAAGCTGATGAAGGACCTGCTGTCAGACGATGACAACCAGGAGAAGATGATCTATTTCCTCCTGCTGGACCGGAAGGAGAGGTACCCCAGCCATGAAGACCAAAACCTCCCCCCGCGCAATGATATAGATCCCCCAAGGAAGCGAGTAGACTCCCCCATGTTGAACCGGCACGGGAAGAGGAGGCCGGAGCGTAAGTCTATGGAGGTGTTGAGTGTGACGGACGGCGGATCACCTGTTCCAGCACGGAGAGCCATCGACATGACACAACACGGACAGAGtaaaacagtgTTCAGTAAAAGCTTGGATATCACTGAGGCCCACCTCAGGTGCAGCAAAGAGGAAAGATCACGCTCAATCAGCGGGGCTTCTTCAGGCCTTTCCACAAGTCCACTAAGCAGTCCACGGCCGGGTCGGAAGTTCTTTGTACCCCCACAGACATCCGAATTTTCCCTATCGCCCAACACTAGTCCCCTTGATTCCCCAGAACAGCCCTGTGCTAACCAAATTGAGGCTCATACACCAACGCCCAACTCATTGTCCCCAAATTCAGCATCCATGTCGCTCCTGGGTCCGTGCCCCAAGACCCAGACTCTTCCAGCCAAGCCTAAAGTTTCCGATAAGCCCTTACACGCCACTAGATCTAACCCATTACCAGACACTGAGCCCCAGCCCATTTCTGCGGCACGCTCAGAGCCTTCCACCCCATCCCAGCCGCAGCCGCCTCCCATTCCCGGCAGCCCTTTGGTGCGCCGGGTCACCCCCATTATCACCGCCCCTCCTCAACTCTCAGTGCCCTTCACACCCATCACGCCTCTCGCTCCAATCCGCCTACACCACTTCCACCCTGTACCCGGCTCTGACCACAGCACCAAATCTATCCCCACCATACAGGTGACCCCCCACCCCTCCCCCAGGGGCAGCCCTCTCCCCACCCCCAAAGGGACACCCGTCCACACACCCAAGGAGAGCCCGGCGGGTACTCCAACCCCGACACCTCCTCCAAGCCCCTCCATCGGGGGAATGCCCTGGAGGACACGCCTCAACTCCATCAAGAACAGCTTCCTGGGCTCGCCGCGCTTCCACCGCAGGAAACTGCAAGTTCCTACCCAAGAGGAGATGTCCAGCCTCACACCAGAGTCTTCCCCAGAACTTGCCAAAAAGTCATGGTTTGGTAATTTTATCAACCTGGAGAAAGAGGAGCAGATCTTCGTGGTGATCAAGGACAAGCCTCTGAGCTCCATCAAAGCCGACATAGTGCAAGCCTTTCTGTCGattccgAGTCTCAGTCACAGTGTGATATCTCAGACGAGTTTTCGGGCGGAGTATAAGTCCACAGCAGGCCCCACCGTCTTCCAGAAGCCTGTGAAGTTCCAGGTGGACATCACCTACACAGAGAGCAGCACAGCCACCAAGGAGAACGGCATCTACTCCGTCACCTTCACCCTGCTCTCAGGTCCAAGTCGGCGCTTCAAGCGAGTGGTGGAGACGATCCAGACACAGTTGTTAAGCACGCACGACCAGCCCGGAGTCCAGCAGCTGGCCGGCAGCCCATTGAGTAACTTCTTTGACGTAATTAAACAACTTTTTTCAGACGAGAAGAACGGCCAGGTGCCCCACCCACCTGGCACGCCCAACCGACACGCGCCTAACGCCCGGCGGCACGAGCCCGACCCTAGTGACTCTAAGTGCCCAGCGGGCAATGCCAGGGACAGTCCCCGGATGGTGGCCTCTGTTGGAACACAGGAGCAGCCCTAGAGAAGATTTCTGTTGTAGATCTGTAGATTgagctttttccttttttttgttttattttttcttttcttttttttttcttttgttcaacCTTAGTATAAGAATATCTAACTGATGTACTGTATGAACTGTCAGCAGTGATGTAAATAACCGAATAGACTTTTGTAATGATGGAAcgactgtataaaaaaaaaacacacatatgaaGAGGAGTTTTACATAGTAGAGCACATTCATACGCCCTCCCCCTGCTCTGTCCATCCATCCGCCAACCCAGCCCAGCCCAGCTCAGTCTAATCCCCCACACTTCCACCCACTCAATCACCCACCCATTGTCTGTCATTTGTGGCAAAGCCGCTTTTTTTCCTGTTGTATCCACTcttttttccttccttccttccttccttgctTCCTTTTCCTCCCTCACCTGTGTAATGACTTGTTTCTGCTGCCAGGAATTATCCAGAAAAGCTATTAACGCCCCCCATCCCGCATCCCTGCTCCGCCTGCGCCCGCCCGCACCAACCACACTCGCCGGCAGAGGGCGCCGTTCACCGCGAGACAATTTCCGAGGAAACTGGACCCTTCATCCCTCCTCCTCACCTTCACCTTTCCTCTCCAGATCATCTGTGCTCTTGAggataacacacatacacacacacatacatacatacatatacacacaaacatacacacagatacacacagtcTCCGATCAACTCTTCTCTCCAGGCCAGACTCCACCCCTTCCTCTTCGTCCTCCTCGCCCTCCTCGACCCTTCTTCAATCTCCTCATCCTCCAAGCTTCTGAACTTtaacacgcaaacacacacacacacacacactcacgaaGAACTTATGCGACAAGCCTTCAGCCTGCTCAACCACCTTACTTACACTACTTACATTAGGCTactcacatccacacacacacacgtgcacaattacacatacataaacacacacacacacggacactcTTACGGACATGCACAACTCTGGGATTtactcaaaaagaaaaaaaaaacgagagtgGAAACGGGGAGAAAAGACCTTAAGGATTGTCCCAAGGGGATGGAAACTCTTCACAGATTGTATTGTGTCATTTTTCGATGTTTCTTTTCAATGAAGATCCTAAAGCACTGCTGCAAATGGATGAAATGCTTATTCCCAACAAATATGTGGGTTGGGGATGGAATGGGATATTATAGGATGGGATGGGAGGAGATGGGAATAGGGTGGTGGGCATTGGGGCATTGGGGGTCGGGAAGATGAGTTAATATTCAGAGGAATGATGTCGGGTCCATGGAGATTATATACTTATGAATGATTTGTTCTGTTGTACAGACCAATACACTATGTATAACGAAATGTCTAGATGTAATACTAATGTTTAGTTATGTTGTAGATCCAGATTTAAATCGTGTGCTGTCACATAATTGCCATTTTTCCTTGTATTTTATCCATCCTTTATGAAACGTTTTATTTGACCTCATTGTTTCAGAGTAGCGGTTGTTGCTTCGTTCCGCCCGTTTTACGGTTCATATCTCATGTCTTGATGACCAGCAGTTATAGAGCACGGAAGAGGTGTATAATTCATACGtgactatttttgtatttttgtttgttttgttttgtttttttctctcttttatttattcatatctgGTCCACTTCTTCTTTATCTGTACCTTAATCCctaatttatttctattatcAGATTATGTATAGGAGAGGAAGACGTTAGATGATGAActgaatgttatttatttacagccCCGAGCGCTGGTATGCGCCGGGGCGACGCAGATTTGTTCATTTgaagaacacaaaaaaaagaaaagaaaagaacaaaaaagagatCTTTCTTATGTCTTGAGTTAAGAGAATTATGTGGACATATTTGAggatatttctttctttcctagCTTtgaatgagataaaaaaaaacatgtagtaTATGTTTAAAAACGGTAATTTAACAGTTATTTAAGAATGTAGTCTAGCCTCTTCGGGGAGGGAATGAGCCTcttcttgatatttgtcagttTCATTGTGTGTGTACAATGgattgagacaaaaaaaaaaaaaaacaggctcctCTTGAATCAGTTCTCTTGTAAATAGACTGATCCCACCTTCTTCAGACGTGAAGTTGAAGTGTCGGGTGGGCGGTTCCTGCTCTTTGCTTTTAACTTGTATTATTGCTGTGTGCATGCCAGACATTGGCTTTCCTTTGCATGGCGCTAGTGTAATTGTTAACCCCCCACCCTCCTCTCGCTACTCCTTCCCTCCGTTACGTGAGGCGTTGGGAGGGGGAGGACCCTCTCGactcctctcttttttctctgttattCTAGCCGCTGTTTttctgtccttctctctcttttcccgtCCTTTAGTGCACTGAGTTTTGAAATGCTTCCTCTCGTCTGTACCatgtacctctctctctctctcttctctctctctctcctctctctctctctcctctctctctctctctacaccctCTACCCTCACAAGGAAAGAAAACGATTCCATCCGTCTCGCGAGCCCTAGTTTACAGACACACTAagagttcctttttttttttcttttttttcccaatttcttttttttttgggacaaaacaaaaacaaagcaataCCTGTTGTTGATCATCCTGTTTTATACAGTAGTCTTCTTCTACTGAACATTAAGGCTCCAGACGACGAGCGAGATGAACACTTATCTTTGGCCGCTGCAGAGCAGGAACAAACCATGAAGCTGTAAAACCCCTTGTAACATAACTGTGAGCAATTTCAGATTTCAGAGcggaaacaaactaaaaaaaaatacgaaaagaaaaaaaaatcaaacaaaacataaCAATAAACTCATTCACTTActaggaa

Function

symbol description
brsk2a Orthologous to human BRSK2 (BR serine/threonine kinase 2).
brsk2b Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human BRSK2 (BR serine/threonine kinase 2).

NR:

description
PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X1

GO: NA

KEGG:

id description
K08796 BRSK; BR serine/threonine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
TU98085 False 420 lncRNA 0.37 2 10571212 10626964
TU98086 False 420 lncRNA 0.37 2 10571295 10626964
XM_022671910.1 True 5890 mRNA 0.49 20 10272919 10626963

Neighbor

gene id symbol gene type direction distance location
tsg101 tsg101,tsg101a coding upstream 51092 10212563 ~ 10221827 (+)
LOC103047796 NA coding upstream 60423 10207709 ~ 10212496 (+)
hras hras,rash,LOC107562835,LOC103357265 coding upstream 66797 10185737 ~ 10206122 (+)
irf7 NA coding upstream 199818 10065416 ~ 10073101 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding upstream 295095 9974224 ~ 9977824 (+)
igsf22 igsf22 coding downstream 348757 10975721 ~ 11000591 (+)
spty2d1 spty2d1 coding downstream 402522 11029486 ~ 11034828 (+)
LOC103022764 uevld,LOC108275186 coding downstream 410536 11037500 ~ 11048398 (+)
th th,LOC108274586 coding downstream 478690 11105654 ~ 11116630 (+)
LOC103024122 LOC108439251,LOC100136550,LOC100304637,LOC107675272 coding downstream 496215 11123179 ~ 11132277 (+)
LOC111193092 NA non-coding upstream 173774 10097259 ~ 10099145 (+)
G72617 NA non-coding upstream 214033 10058685 ~ 10058886 (+)
G72615 NA non-coding upstream 215101 10057483 ~ 10057818 (+)
G72612 NA non-coding upstream 244073 10028483 ~ 10028846 (+)
G72606 NA non-coding upstream 294497 9977975 ~ 9978422 (+)
G72752 NA non-coding downstream 171028 10797992 ~ 10798845 (+)
G72753 NA non-coding downstream 172582 10799546 ~ 10801772 (+)
G72766 NA non-coding downstream 381585 11008549 ~ 11015607 (+)
G72871 NA non-coding downstream 557702 11184666 ~ 11184981 (+)
G72875 NA non-coding downstream 595810 11222774 ~ 11223004 (+)
G72621 NA other upstream 190779 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 302877 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 1123500 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 1236893 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 3387378 6881587 ~ 6885541 (+)
LOC103043719 NA other downstream 2244520 12871484 ~ 12897931 (+)
G73533 NA other downstream 4021865 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 4264570 14891534 ~ 14921003 (+)
svip svip other downstream 4945338 15572302 ~ 15577533 (+)
G74169 NA other downstream 5659712 16286676 ~ 16288329 (+)

Expression


Co-expression Network