G72845 (spty2d1,LOC107688563)


Basic Information

Item Value
gene id G72845
gene name spty2d1,LOC107688563
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11033157 ~ 11034777 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98240
AGCTTCTCATTTCAGTCAGCAATTGAATATTACAAGTAGTAAAATAAGACTCCCAATCTGTGTGACATTCtgaacaaataatgaaataatgaagtaaTGAAAGTTGTCGCTTTGTATTCCAAGGCAGCCCACATAATTTCATCATCatggatataaaaatgttagtGACTCATTATTATATTGTACTTTCTCTACAGCTCAGCTATGAGAGATGATCTCTTGATAGTGCATATCTGAAATAAATAACGTAACATTAATTGCACAGTGGCACAAGGAAATTTCAAACCCTGAATCTTCACACAATGCCAGTCCATCAAAAACCACACATCAattctttctctgttttgctttcattgcttgttttcttttcatctcctcctcctccatacGCATGTCCTCCTCATCTTCCTTGATACCCATGCGTAAACTTCTTGCCTCCTCCTTCTGCTGTTCCTTCCAACTGCTTTCCATATACTTTAACGCATAGTCGCTCTCATCTTTGTATCTGGTTCGATCATAGCCAAAGATTTCCCTGATATGCTTAGAAATTTCATCTTGCTCTTCTCCTTCATCGTCAATGAAGTCGTCCATCTCAGAGTcatattcttcttcttcatcttcataCTTCCGCTTGTAGCTGGAGGTTATTGGTGGTAGAGCTACT

Function

symbol description
spty2d1 Predicted to enable DNA binding activity; RNA polymerase I core binding activity; and histone binding activity. Predicted to be involved in nucleosome organization; regulation of chromatin assembly; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in axial mesoderm; hatching gland; notochord; and polster. Orthologous to human SPTY2D1 (SPT2 chromatin protein domain containing 1).

NR:

description
PREDICTED: protein SPT2 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98240 True 664 lncRNA 0.38 3 11033157 11034777

Neighbor

gene id symbol gene type direction distance location
tmem86a tmem86a,LOC107707555,LOC107709947,LOC107688565 coding downstream 4507 11008621 ~ 11028650 (-)
b4galnt4 b4galnt4,LOC108439245 coding downstream 67975 10725524 ~ 10965182 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding downstream 315173 10630846 ~ 10717984 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding downstream 799960 10223118 ~ 10233197 (-)
lrrc56 NA coding downstream 848311 10166327 ~ 10184846 (-)
LOC103038359 NA coding upstream 14920 11049697 ~ 11084679 (-)
kcnj11 kcnj11,LOC107758740 coding upstream 702506 11737283 ~ 11739371 (-)
abcc8 abcc8 coding upstream 705185 11739962 ~ 11804035 (-)
LOC111193095 NA coding upstream 732732 11767509 ~ 11776139 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding upstream 771040 11805817 ~ 11834740 (-)
G72807 NA non-coding downstream 403333 10629582 ~ 10629824 (-)
G72806 NA non-coding downstream 403671 10629197 ~ 10629486 (-)
G72803 NA non-coding downstream 406132 10571164 ~ 10627025 (-)
G72802 NA non-coding downstream 407886 10567904 ~ 10625271 (-)
G72689 tsg101,tsg101a non-coding downstream 811523 10212580 ~ 10221634 (-)
G72847 NA non-coding upstream 2731 11037508 ~ 11038145 (-)
G72857 NA non-coding upstream 44311 11079088 ~ 11132273 (-)
G72881 NA non-coding upstream 196402 11231179 ~ 11231678 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding upstream 659901 11694678 ~ 11733149 (-)
G72974 NA non-coding upstream 699367 11734144 ~ 11734846 (-)
LOC103046452 rassf7 other downstream 870673 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 979123 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 1130264 9856399 ~ 9902893 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other downstream 1208638 9801055 ~ 9824519 (-)
G72453 NA other downstream 1807598 9188399 ~ 9225559 (-)
LOC111193093 NA other upstream 190002 11224779 ~ 11225954 (-)
LOC111193052 NA other upstream 486110 11520887 ~ 11545246 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 1013849 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 1513913 12548690 ~ 12564978 (-)
G73172 NA other upstream 1576057 12610834 ~ 12621356 (-)

Expression


Co-expression Network