G72876


Basic Information

Item Value
gene id G72876
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11224794 ~ 11226186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98274
ACTCAAGTATACAGATTCAAACTGCCTCATTCAAACTTTCAGTCATTTTTAGACAAAATTCAGTTCAATGGTGCAGACTGTCAGTTTTCCACACTTTTAAGGGTCTCACAGATCAggattattattctttattttgcagAGGACCCTTATTGCATTGTGCCATAGCATTGCTATATGAATACAGGAAATATAATGTAACAAACattgatataataaaaaaaacaatgagaggCACATGCATGATTTTCCAGAGCTAACTTTTGGTAGACTATGGTTATATACATTGCATCAggtcttttttgtcatttttgtgatagttttttttttttgtgtgtcggagtaaacagcaaaaacacagaaGGAAACTAATagtgaaaaaggaaaaatggaGGACAGCAGAGAGTGAGGGGTTCAGTTGTGCGATAACAAACTCATAACAGGCAACACaactctttttttactttatattatgtaataattatttatttatttatttattattattattttagtcttGAATTACTGCCGTAccttgtttctaataaaatggcttAATGGAGCTGAAGGAGGACaataaaaaagactaaaaattatgtttattttcatgTCCATAGCCATAAGACATGCCTCTTTTTACAGCAAgcttaaacacatttatagtAATAAGCCCCCCATCAGACACCTCAATTGAAtgtctcaataaaaaaaatctgattttgtgaaaaaactggatttgggccacttttccTGCTGTTTGATCTCAGCCTGTGTGAGAACATTTCCAGAAGGCAGAATTCCTCCTTTAAATAAGTCTGATTATGACCCATCACACCACCAAGCGATTCCGACAGAAACATCATCATTATCTCAAAACAGTTTTTATCATCTTCTGTCACGAGGGTCTGTAGGGGTTTAGAGACCGAACCATTCGGTGACCCCTCCTCTCCTGGGGTCTGGTTTCTGCCTCTGTCGCTCATCTTCCATGAATTTCTCCTGCATCTCctccacagaaccttcttcatgctttttttccttttcggGGAAGATATCTGGAAACTGGAAGGTCTGCTGCTGGCCC
>TU98277
aaataaaaacagagacagagacgcACTGCAATGTTTCCATCTTTTAATGGAAGATAAACTCAAGTATACAGATTCAAACTGCCTCATTCAAACTTTCAGTCATTTTTAGACAAAATTCAGTTCAATGGTGCAGACTGTCAGTTTTCCACACTTTTAAGGGTCTCACAGATCAggattattattctttattttgcagAGGACCCTTATTGCATTGTGCCATAGCATTGCTATATGAATACAGGAAATATAATGTAACAAACattgatataataaaaaaaacaatgagaggCACATGCATGATTTTCCAGAGCTAACTTTTGGTAGACTATGGTTATATACATTGCATCAggtcttttttgtcatttttgtgatagttttttttttttgtgtgtcggagtaaacagcaaaaacacagaaGGAAACTAATagtgaaaaaggaaaaatggaGGACAGCAGAGAGTGAGGGGTTCAGTTGTGCGATAACAAACTCATAACAGGCAACACaactctttttttactttatattatgtaataattatttatttatttatttattattattattttagtcttGAATTACTGCCGTAccttgtttctaataaaatggcttAATGGAGCTGAAGGAGGACaataaaaaagactaaaaattatgtttattttcatgTCCATAGCCATAAGACATGCCTCTTTTTACAGCAAgcttaaacacatttatagtAATAAGCCCCCCATCAGACACCTCAATTGAAtgtctcaataaaaaaaatctgattttgtgaaaaaactggatttgggccacttttccTGCTGTTTGATCTCAGCCTGTGTGAGAACATTTCCAGAAGGCAGAATTCCTCCTTTAAATAAGTCTGATTATGACCCATCACACCACCAAGCGATTCCGACAGAAACATCATCATTATCTCAAAACAGTTTTTATCATCTTCTGTCACGAGGGTCTGTAGGGGTTTAGAGACCGAACCATTCGGTGACCCCTCCTCTCCTGGGGTCTGGTTTCTGCCTCTGTCGCTCATCTTCCATGAATTTCTCCTGCATCTCctccacagaaccttcttcatgctttttttccttttcggGGAAGATATCTGGAAACTGGAAGGTCTGCTGCTGGCCCTGTAGGGAAAGCAGGAATTCCTTTAAGTTTAAGGAGAGATAACCAGCACGACCGTACTGTTTAACTAAGGGTCCTCCAAATTCCCTTTGCTTTACCAAGACCCCACCGCATGCCGTTTTCACAGCACAAGTCCTGTTTTTCATCTTGTTTGCTTGGGAAATATGGTTTACAACCCAATCCACAACTGAACGCAAGCAAGGTTCAGAGTGAATGCAGtctgttcttaaaaaacaaggaaagtaaaaaaggaaaagcctG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98274 False 1078 lncRNA 0.37 1 11224851 11225928
TU98277 True 1393 lncRNA 0.37 1 11224794 11226186

Neighbor

gene id symbol gene type direction distance location
LOC103024122 LOC108439251,LOC100136550,LOC100304637,LOC107675272 coding upstream 92517 11123179 ~ 11132277 (+)
th th,LOC108274586 coding upstream 108164 11105654 ~ 11116630 (+)
LOC103022764 uevld,LOC108275186 coding upstream 176396 11037500 ~ 11048398 (+)
spty2d1 spty2d1 coding upstream 189966 11029486 ~ 11034828 (+)
igsf22 igsf22 coding upstream 224203 10975721 ~ 11000591 (+)
LOC103028645 LOC108428835 coding downstream 337146 11563332 ~ 11634593 (+)
LOC103029705 mob2,LOC108411394,LOC108274974 coding downstream 439629 11665815 ~ 11733195 (+)
LOC103038976 LOC108428833 coding downstream 699801 11925987 ~ 11938380 (+)
myod1 myod1,myod coding downstream 713338 11939524 ~ 11941817 (+)
LOC103034044 NA coding downstream 729438 11955624 ~ 11963784 (+)
G72875 NA non-coding upstream 1790 11222774 ~ 11223004 (+)
G72871 NA non-coding upstream 39813 11184666 ~ 11184981 (+)
G72766 NA non-coding upstream 209187 11008549 ~ 11015607 (+)
G72753 NA non-coding upstream 423022 10799546 ~ 10801772 (+)
G72752 NA non-coding upstream 425949 10797992 ~ 10798845 (+)
G72882 NA non-coding downstream 294826 11521012 ~ 11522661 (+)
G72893 NA non-coding downstream 341391 11567577 ~ 11625496 (+)
G72905 NA non-coding downstream 384284 11610470 ~ 11679822 (+)
G72946 NA non-coding downstream 586813 11812999 ~ 11818238 (+)
G72993 NA non-coding downstream 717791 11943977 ~ 11951765 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 597830 10272919 ~ 10626964 (+)
G72621 NA other upstream 1142654 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 1254752 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 2075375 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 2188768 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 1645298 12871484 ~ 12897931 (+)
G73533 NA other downstream 3422643 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 3665348 14891534 ~ 14921003 (+)
svip svip other downstream 4346116 15572302 ~ 15577533 (+)
G74169 NA other downstream 5060490 16286676 ~ 16288329 (+)

Expression


Co-expression Network