LOC111193093


Basic Information

Item Value
gene id LOC111193093
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11224779 ~ 11225954 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98281
TTAAAGGAATTCCTGCTTTCCCTACAGGGCCAGCAGCAGACCTTCCAGTTTCCAGATATCTTCCccgaaaaggaaaaaaagcatgaagaaggttctgtggagGAGATGCAGGAGAAATTCATGGAAGATGAGCGACAGAGGCAGAAACCAGACCCCAGGAGAGGAGGGGTCACCGAATGGTTCGGTCTCTAAACCCCTACAGACCCTCGTGACAGAAGATGATAAAAACTGTTTTGAGATAATGATGATGTTTCTGTCGGAATCGCTTGGTGGTGTGATGGGTCATAATCAGACTTATTTAAAGGAGGAATTCTGCCTTCTGGAAATGTTCTCACACAGGCTGAGATCAAACAGCAggaaaagtggcccaaatccagttttttcacaaaatcagattttttttattgagacaTTCAATTGAGGTGTCTGATGGGGGGCTTATTactataaatgtgtttaagcTTGCTGTAAAAAGAGGCATGTCTTATGGCTATGGAcatgaaaataaacataatttttagtcttttttattGTCCTCCTTCAGCTCCATTaagccattttattagaaacaaggTACGGCAGTAATTCaagactaaaataataataataaataaataaataaataattattacataatataaagtaaaaaaagagttGTGTTGCCTGTTATGAGTTTGTTATCGCACAACTGAACCCCTCACTCTCTGCTGTCCtccatttttcctttttcactATTAGTTTCCttctgtgtttttgctgtttactccgacacacaaaaaaaaaaaactatcacaaaaatgacaaaaaagaccTGATGCAATGTATATAACCATAGTCTACCAAAAGTTAGCTCTGGAAAATCATGCATGTGcctctcattgttttttttattatatcaatGTTTGTTACATTATATTTCCTGTATTCATATAGCAATGCTATGGCACAATGCAATAAGGGTCCTctgcaaaataaagaataataatccTGATCTGTGAGACCCTTAAAAGTGTGGAAAACTGACAGTCTGCACCATTGAACTGAATTTTGTCTAAAAATGACTGAAAGTTTGAATGAGGCAGTTTGAATCTGTATACTTGAGTTTATCTTCCATTAAAAGATGGAAACATTGCAGTgcgtctctgtctctgtttttatttaagagCTTTTAGACT
>XM_022672120.1
GGGCCAGCAGCAGACCTTCCAGTTTCCAGATATCTTCCccgaaaaggaaaaaaagcatgaagaaggttctgtggagGAGATGCAGGAGAAATTCATGGAAGATGAGCGACAGAGGCAGAAACCAGACCCCAGGAGAGGAGGGGTCACCGAATGGTTCGGTCTCTAAACCCCTACAGACCCTCGTGACAGAAGATGATAAAAACTGTTTTGAGATAATGATGATGTTTCTGTCGGAATCGCTTGGTGGTGTGATGGGTCATAATCAGACTTATTTAAAGGAGGAATTCTGCCTTCTGGAAATGTTCTCACACAGGCTGAGATCAAACAGCAggaaaagtggcccaaatccagttttttcacaaaatcagattttttttattgagacaTTCAATTGAGGTGTCTGATGGGGGGCTTATTactataaatgtgtttaagcTTGCTGTAAAAAGAGGCATGTCTTATGGCTATGGAcatgaaaataaacataatttttagtcttttttattGTCCTCCTTCAGCTCCATTaagccattttattagaaacaaggTACGGCAGTAATTCaagactaaaataataataataaataaataaataaataattattacataatataaagtaaaaaaagagttGTGTTGCCTGTTATGAGTTTGTTATCGCACAACTGAACCCCTCACTCTCTGCTGTCCtccatttttcctttttcactATTAGTTTCCttctgtgtttttgctgtttactccgacacacaaaaaaaaaaaactatcacaaaaatgacaaaaaagaccTGATGCAATGTATATAACCATAGTCTACCAAAAGTTAGCTCTGGAAAATCATGCATGTGcctctcattgttttttttattatatcaatGTTTGTTACATTATATTTCCTGTATTCATATAGCAATGCTATGGCACAATGCAATAAGGGTCCTctgcaaaataaagaataataatccTGATCTGTGAGACCCTTAAAAGTGTGGAAAACTGACAGTCTGCACCATTGAACTGAATTTTGTCTAAAAATGACTGAAAGTTTGAATGAGGCAGTTTGAATCTGTATACTTGAGTTTATCTTCCATTAAAAGATGGAAACATTGCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98281 True 1176 lncRNA 0.36 1 11224779 11225954
XM_022672120.1 False 1109 mRNA 0.36 1 11224820 11225928

Neighbor

gene id symbol gene type direction distance location
LOC103038359 NA coding downstream 140100 11049697 ~ 11084679 (-)
tmem86a tmem86a,LOC107707555,LOC107709947,LOC107688565 coding downstream 196129 11008621 ~ 11028650 (-)
b4galnt4 b4galnt4,LOC108439245 coding downstream 259597 10725524 ~ 10965182 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding downstream 506795 10630846 ~ 10717984 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding downstream 991582 10223118 ~ 10233197 (-)
kcnj11 kcnj11,LOC107758740 coding upstream 511329 11737283 ~ 11739371 (-)
abcc8 abcc8 coding upstream 514008 11739962 ~ 11804035 (-)
LOC111193095 NA coding upstream 541555 11767509 ~ 11776139 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding upstream 579863 11805817 ~ 11834740 (-)
LOC103031503 tnnt3b,LOC108428830,LOC108275000 coding upstream 718471 11944425 ~ 11953789 (-)
G72857 NA non-coding downstream 92506 11079088 ~ 11132273 (-)
G72847 NA non-coding downstream 186634 11037508 ~ 11038145 (-)
G72845 spty2d1,LOC107688563 non-coding downstream 190002 11033157 ~ 11034777 (-)
G72807 NA non-coding downstream 594955 10629582 ~ 10629824 (-)
G72806 NA non-coding downstream 595293 10629197 ~ 10629486 (-)
G72881 NA non-coding upstream 5225 11231179 ~ 11231678 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding upstream 468724 11694678 ~ 11733149 (-)
G72974 NA non-coding upstream 508190 11734144 ~ 11734846 (-)
G73030 NA non-coding upstream 899582 12125536 ~ 12126823 (-)
G73098 NA non-coding upstream 968619 12194573 ~ 12196578 (-)
LOC103046452 rassf7 other downstream 1062295 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 1170745 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 1321886 9856399 ~ 9902893 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other downstream 1400260 9801055 ~ 9824519 (-)
G72453 NA other downstream 1999220 9188399 ~ 9225559 (-)
LOC111193052 NA other upstream 294933 11520887 ~ 11545246 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 822672 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 1322736 12548690 ~ 12564978 (-)
G73172 NA other upstream 1384880 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 3316242 14542196 ~ 14545536 (-)

Expression


Co-expression Network