LOC111193052


Basic Information

Item Value
gene id LOC111193052
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11520887 ~ 11545246 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98292
ctcttcccgcACCGCTGCACGACCCGGACTCGCTTATTCGCCCGAGATTCCGCCGGTAAAGTGACTTTTTCAGCTTTTCCCCGCTGCTCTGCTGTTTTAGCGGAGTTTACAGGGTGAGGGAGGAACTGAGGGTCGAGTCCGGTTTAAAGAGAGCGGTGGTGAGAAACACCGCGGGATATGTGAGGCTCACCGGCAGCTCCAACCCACCGACAGCCCACCGACAGCACCATGAGGCGGGACGCGTTCAGGTGGACCCGCCGCGCAGCTCTACTGGCTCTCTGTGTGCTGCTCCAGGTCTTTAACTCTGTAACAACAGAAGAAAATGCAACAGCACAGCCTGGGGGAAACAGTACAGTTACTGAAAGTGTAATTTCCACAACCCTCAGCACttctgctggagcagacacttcAGAAACATCATCCACAAACAATGCTGCTACAACTACTGAAGGAACTGTAACACCAGAACCATCATCCACAAGTAATGATCCTGAGACTTCCAAAGATACGACATCatccacaaataataatatgccTGGATCTACCGCTATGATTACAACATCAGATCCATCATCCACAAATAATACAACTGTGGATACTAAAGATATggcaacaacaaacacacaatcCACAGATTCTACTTCTACAGCAACTACAACATCGGCTCAAGGTTCAGCAGATACTACTAAAGATATGGCAACACCAAAACCATCATCTACAAATGATGCTTCTGCATCTACCACTGAGATTCCAACATCAGAACcatcagcaacatcacccaCAAATAATAACTCTGAGGTTACTACA
>TU98300
TGATGGTGGATGGCCGCTCCGCCCAGACTGGACTGGAAAAAAACtgacaacaaaaaaacttttcctcctctttctacttgtctctctctcttcccgcACCGCTGCACGACCCGGACTCGCTTATTCGCCCGAGATTCCGCCGGTAAAGTGACTTTTTCAGCTTTTCCCCGCTGCTCTGCTGTTTTAGCGGAGTTTACAGGGTGAGGGAGGAACTGAGGGTCGAGTCCGGTTTAAAGAGAGCGGTGGTGAGAAACACCGCGGGATATGTGAGGCTCACCGGCAGCTCCAACCCACCGACAGCCCACCGACAGCACCATGAGGCGGGACGCGTTCAGGTGGACCCGCCGCGCAGCTCTACTGGCTCTCTGTGTGCTGCTCCAGGTCTTTAACTCTGTAACAACAGAAGAAAATGCAACAGCACAGCCTGGGGGAAACAGTACAGTTACTGAAAGTGTAATTTCCACAACCCTCAGCACttctgctggagcagacacttcAGAAACATCATCCACAAACAATGCTGCTACAACTACTGAAGGAACTGTAACACCAGAACCATCATCCACAAGTAATGATCCTGAGACTTCCAAAGATACGACATCatccacaaataataatatgccTGGATCTACCGCTATGATTACAACATCAGATCCATCATCCACAAATAATACAACTGTGGATACTAAAGATATggcaacaacaaacacacaatcCACAGATTCTACTTCTACAGCAACTACAACATCGGCTCAAGGTTCAGCAGATACTACTAAAGATATGGCAACACCAAAACCATCATCTACAAATGATGCTTCTGCATCTACCACTGAGATTCCAACATCAGAACcatcagcaacatcacccaCAAATAATAACTCTGAGGTTACTACagatatgacatcagcaacatcacc
>XM_022671911.1
AAAGCAGTGGGCTGTGATGTGACTGATGGTGGATGGCCGCTCCGCCCAGACTGGACTGGAAAAAAACtgacaacaaaaaaacttttcctcctctttctacttgtctctctctcttcccgcACCGCTGCACGACCCGGACTCGCTTATTCGCCCGAGATTCCGCCGGTAAAGTGACTTTTTCAGCTTTTCCCCGCTGCTCTGCTGTTTTAGCGGAGTTTACAGGGTGAGGGAGGAACTGAGGGTCGAGTCCGGTTTAAAGAGAGCGGTGGTGAGAAACACCGCGGGATATGTGAGGCTCACCGGCAGCTCCAACCCACCGACAGCCCACCGACAGCACCATGAGGCGGGACGCGTTCAGGTGGACCCGCCGCGCAGCTCTACTGGCTCTCTGTGTGCTGCTCCAGGTCTTTAACTCTGTAACAACAGAAGAAAATGCAACAGCACAGCCTGGGGGAAACAGTACAGTTACTGAAAGTGTAATTTCCACAACCCTCAGCACttctgctggagcagacacttcAGAAACATCATCCACAAACAATGCTGCTACAACTACTGAAGGAACTGTAACACCAGAACCATCATCCACAAGTAATGATCCTGAGACTTCCAAAGATACGACATCatccacaaataataatatgccTGGATCTACCGCTATGATTACAACATCAGATCCATCATCCACAAATAATACAACTGTGGATACTAAAGATATggcaacaacaaacacacaatcCACAGATTCTACTTCTACAGCAACTACAACATCGGCTCAAGGTTCAGCAGATACTACTAAAGATATGGCAACACCAAAACCATCATCTACAAATGATGCTTCTGCATCTACCACTGAGATTCCAACATCAGAACcatcagcaacatcacccaCAAATAATAACTCTGAGGTTACTACagatatgacatcagcaacatcacccaCAAATAATACCTCTGAGGTTACTACAGATATGACATCAACAACATCACCCACAAATAATAACTCTGAGGTTACTACAGATATGACATCAACAACATCACCCACAAATAATAACTCTGAGGTTATTACagatatgacatcagcaacatcacccacaaataatacctctgaggttactacagatatgacatcagcaacatcacccaCAAATAATAACTCTGAGGTTATTACagatatgacatcagcaacatcacccaCAAATATTAACTCAGAGGTTATTACagatatgacatcagcaacatcacccaCAAATATTAACTCAGAGGTTACTACagatatgacatcagcaacatcacccaCAAATATTAACTCAGAGGTTATTACagatatgacatcagcaacatcacccaCAAATATTAACTCAGAGGTTACTACagatatgacatcagcaacatcacccaCAAATATTAACTCAGAGGTTACTACagatatgacatcagcaacatcacccaCAAATATTAACTCAGAGGTTACTACagatatgacatcagcaacatcacccaCAAATAATACCTCTGAGGCTCAAGATGATGTCGGCCACAAAGTTGTCTTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98292 False 807 TUCP 0.48 3 11521012 11545136
TU98300 False 917 TUCP 0.48 4 11520887 11545223
XM_022671911.1 True 1556 mRNA 0.43 4 11521832 11545246

Neighbor

gene id symbol gene type direction distance location
LOC103038359 NA coding downstream 436208 11049697 ~ 11084679 (-)
tmem86a tmem86a,LOC107707555,LOC107709947,LOC107688565 coding downstream 492237 11008621 ~ 11028650 (-)
b4galnt4 b4galnt4,LOC108439245 coding downstream 555705 10725524 ~ 10965182 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding downstream 802903 10630846 ~ 10717984 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding downstream 1287690 10223118 ~ 10233197 (-)
kcnj11 kcnj11,LOC107758740 coding upstream 192037 11737283 ~ 11739371 (-)
abcc8 abcc8 coding upstream 194716 11739962 ~ 11804035 (-)
LOC111193095 NA coding upstream 222263 11767509 ~ 11776139 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding upstream 260571 11805817 ~ 11834740 (-)
LOC103031503 tnnt3b,LOC108428830,LOC108275000 coding upstream 399179 11944425 ~ 11953789 (-)
G72881 NA non-coding downstream 289209 11231179 ~ 11231678 (-)
G72857 NA non-coding downstream 388614 11079088 ~ 11132273 (-)
G72847 NA non-coding downstream 482742 11037508 ~ 11038145 (-)
G72845 spty2d1,LOC107688563 non-coding downstream 486110 11033157 ~ 11034777 (-)
G72807 NA non-coding downstream 891063 10629582 ~ 10629824 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding upstream 149432 11694678 ~ 11733149 (-)
G72974 NA non-coding upstream 188898 11734144 ~ 11734846 (-)
G73030 NA non-coding upstream 580290 12125536 ~ 12126823 (-)
G73098 NA non-coding upstream 649327 12194573 ~ 12196578 (-)
G73119 LOC108428815,LOC108428741 non-coding upstream 957617 12502863 ~ 12539230 (-)
LOC111193093 NA other downstream 294933 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 1358403 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 1466853 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 1617994 9856399 ~ 9902893 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other downstream 1696368 9801055 ~ 9824519 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 503380 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 1003444 12548690 ~ 12564978 (-)
G73172 NA other upstream 1065588 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 2996950 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 3163812 14709058 ~ 14797283 (-)

Expression


Co-expression Network