CI01000009_04976520_04987680


Basic Information

Item Value
gene id CI01000009_04976520_04987680
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4976486 ~ 4987707 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_04976520_04987680.mRNA
AGTTGCCCATCGAAACAAAAACAACCGATGACACTCTCAGCTGCGCTCCAAACTTTAATGCGCATGCGCTGCGTCGAGACGGAATTGACGTACTGTGTGAAACTGAACGTCTTTGTTCTCCATGTTGGATCATGTACTATATTAACTAAAAGGAGACTTCAGCTCTTCTATGGAGCCAACATGGCCGTTGTTTCGTTTCCCATGTGTTGTGAGGAAACACAGTGGTACGTCTCACAAGAGGCGAGGAGGATTGTCCAGTTTCTACAGAAACCTGCTGTGTTCCTGAACATGACCAAAGACTGGCCAGCATTACATTGGACTGTGGAGCACCTGTCAACTTGCCTTACAGAGAGGGTACGGTTCCGTATTGGGAAAAGGAATGAGGATATGGCTCCTCTTTTTGAAACCGAGTGCTCCTACATTGAAGCAACTGTTAAAGAGTTTCTGTCCTGGACTCTCAATGAGGGTGAATCACTTGTTGGGCCATTTTCTGACTACCACTACAAGGAATTCTGGGCTTATGCTGATTACAAGTACATTGCCCAGCTTTTTCAGGACAAACCTGCCATCTTTCAGGATGTGGTGTGGTCTGATTTTGGCTTTCCCGGCCGAGATGGACGAGACAGCACACTTTGGATTGGCACACAGGGTGCCAACACTCCATGTCACCTTGACTCTTATGGTTGCAATCTTGTCTTCCAGATCCAAGGCAGGAAACGATGGCATCTTTTCCCTCCCGATGACACACCCTGCCTCTACCCTACACGTATCCCATACGAGGAGTCCAGCGTGTTCAGCCAGGTCAGCGTGGTCCATCCAGACCTGAAAAAGTTCCCAGCATTCAGAAAAGCTCGAGTGCACACCGTTACTCTGCAGCCTGGTCAGGTTCTGTTTGTCCCCAGACACTGGTGGCACTATGTGGAGTCTGTGGATCCTGTGACCGTCAGTGTGAACTCCTGGATTGAGATGGACATGGACGATGAGGCCAGAGTAGGAGAAGCTCTCACTAAGACCATTGTGTGTGCTCTGAAAAGCGTTCCCAGCTTAGACAACAACGACCACTGGCTCAATCCTACTGAGGATAGAGTGTCTTCTCATGGCGAAAACATGCAGTATTTGAACCTAGCGGTAAAGGCCTGTATGGACAAGAGGAAAGACGATACTGAAGGCTGGTCTTTGCTTGCAGGCCAGCCTAGAGCAGAGGTGGGAAAACGTGACTCCAGTGGACTGTTAAAGACTCCAGCATCTCCTTTTGTTGTTCCCTTTGGACCTCATCTCATTCCTGTTATTTTGGCTCAGAAACCCGAACGCAACTGCCCAAAGGACACATCTTGTTTCAAGTCCAATGACCCCTCACAGACAAAACAGAGAAGTGACGATGAATTTTGTCAGAGATCTGGTCAGCATGCACATCAGGAAGCAGGAAGCCCAGGAACCTCAGAAGAAGGTGCTGGTATGCACATATCCACCAATGACATGCTAGAGTTCCTGGTACACCCTGATGTCATTACTCTAGTTACAAGGCTAATCATGTGCCGACAAAGAGAACTTCAGTCTTAATTTGTACCGGATGAACAGAACTTTTATAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_04976520_04987680.mRNA True 1594 mRNA 0.48 8 4976486 4987707

Neighbor

gene id symbol gene type direction distance location
CI01000009_04888729_04895882 NA coding downstream 80007 4888197 ~ 4896479 (-)
CI01000009_04778332_04780190 NA coding downstream 190270 4778053 ~ 4786216 (-)
CI01000009_04738315_04741396 RALB.S, RALBA, RALB.L, RALB coding downstream 234060 4738229 ~ 4742426 (-)
CI01000009_04196309_04197268 DNAJC28 coding downstream 779218 4196309 ~ 4197268 (-)
CI01000009_04069741_04071278 NA coding downstream 904882 4069714 ~ 4071604 (-)
CI01000009_05046374_05094978 SEMA5B, SEMA5BA coding upstream 58593 5046300 ~ 5095973 (-)
CI01000009_05110455_05136845 NA coding upstream 122498 5110205 ~ 5138314 (-)
CI01000009_05190789_05192684 NA coding upstream 202787 5190494 ~ 5192890 (-)
CI01000009_05278137_05361256 ADCY5 coding upstream 289430 5277137 ~ 5361478 (-)
CI01000009_05362086_05363378 NA coding upstream 374335 5362042 ~ 5364081 (-)
G53173 NA non-coding downstream 129383 4846901 ~ 4847103 (-)
G53167 NA non-coding downstream 137715 4838462 ~ 4838771 (-)
G53133 NA non-coding downstream 145719 4820723 ~ 4830767 (-)
G53132 NA non-coding downstream 166717 4804438 ~ 4809769 (-)
G53131 NA non-coding downstream 202756 4771212 ~ 4773730 (-)
G53415 NA non-coding upstream 26188 5013895 ~ 5017158 (-)
G53476 NA non-coding upstream 252717 5240424 ~ 5241350 (-)
G53425 NA non-coding upstream 262583 5250290 ~ 5251759 (-)
CI01000009_05367161_05370504 PTPLB, HACD2, DKFZP459B2333 non-coding upstream 378059 5365766 ~ 5370504 (-)
G53487 NA non-coding upstream 381873 5369580 ~ 5369781 (-)
G52828 NA other downstream 745017 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 1714529 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 2077079 2883688 ~ 2893975 (-)
G52410 NA other downstream 2413953 2551724 ~ 2562533 (-)
G53515 NA other upstream 514688 5502395 ~ 5505248 (-)
G55814 NA other upstream 3438114 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 3870445 8856310 ~ 8860563 (-)
G59097 NA other upstream 7300510 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 8987681 13975099 ~ 13978614 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000845 NA coding CM030137.1 CM030137.1 5316197 ~ 5332706 (+)