G72893


Basic Information

Item Value
gene id G72893
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11567577 ~ 11625496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98320
caagccatcaaaccaagctgaactgcttgaatttttgcaccaggagtggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgtatgaaaactgtgattaaaactagggttattccaccaaatcctgatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaagtctgacatctctgcatttttttTGTTATTTTAATGGGACCAAGCTATGTAATGGGCATCTACTTACTTTTGGATTCAAGAGCAATGACTTGCTGTTCAATTACAGTAGAAATGACTGTAGACGCCAGTATGTGCTGGACACATTCCCTCGTCTCATACAAACACAGACATTATTGTTGGGCTGCACTTGTACCAGATTTAGCCAGGCCTTCAGCAGACGTTGTGTAACATTTGGGCcgaaaaatagcaaaaaaatagcTCTCAGCTACAGCCTCTGCTATAAAACCCGATTGACATGGACACACCACTCTCCACTCAGTATTTCCTCTTGTTTGGCGTTCTAACAACACCCGTATCTCAGGCGAACTTGAGCAATCTCTTCCTGTTTGTGTCGCCTTCGTCCAGGAACGTGTTGCTCTTTATGGACGCTATATAAAGCTGTAATGACGGATGACTTGAGAGCCTGAGAGCTGCATAAGAGGAGTGTAAACTCTGACCGTAAGGAAAGAAGTATTTCCGAGCTCTCTGTCTAAGAGATCCTTCCCGTTTCCGCTTCCCCGTCCTGGGCTTGGTGCTTTACTATGTGGTTTATGCATCCTGTTCTGGGTCTGAAGGCCTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98320 True 827 lncRNA 0.43 2 11567577 11625496

Neighbor

gene id symbol gene type direction distance location
LOC103024122 LOC108439251,LOC100136550,LOC100304637,LOC107675272 coding upstream 435300 11123179 ~ 11132277 (+)
th th,LOC108274586 coding upstream 450947 11105654 ~ 11116630 (+)
LOC103022764 uevld,LOC108275186 coding upstream 519179 11037500 ~ 11048398 (+)
spty2d1 spty2d1 coding upstream 532749 11029486 ~ 11034828 (+)
igsf22 igsf22 coding upstream 566986 10975721 ~ 11000591 (+)
LOC103029705 mob2,LOC108411394,LOC108274974 coding downstream 40319 11665815 ~ 11733195 (+)
LOC103038976 LOC108428833 coding downstream 300491 11925987 ~ 11938380 (+)
myod1 myod1,myod coding downstream 314028 11939524 ~ 11941817 (+)
LOC103034044 NA coding downstream 330128 11955624 ~ 11963784 (+)
znf469 NA coding downstream 739869 12365365 ~ 12417357 (+)
G72882 NA non-coding upstream 44916 11521012 ~ 11522661 (+)
G72876 NA non-coding upstream 341391 11224794 ~ 11226186 (+)
G72875 NA non-coding upstream 344573 11222774 ~ 11223004 (+)
G72871 NA non-coding upstream 382596 11184666 ~ 11184981 (+)
G72766 NA non-coding upstream 551970 11008549 ~ 11015607 (+)
G72946 NA non-coding downstream 187503 11812999 ~ 11818238 (+)
G72993 NA non-coding downstream 318481 11943977 ~ 11951765 (+)
G73001 NA non-coding downstream 352712 11978208 ~ 11978882 (+)
G72992 NA non-coding downstream 407587 12033083 ~ 12050540 (+)
G73029 NA non-coding downstream 500137 12125633 ~ 12126858 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 940613 10272919 ~ 10626964 (+)
G72621 NA other upstream 1485437 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 1597535 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 2418158 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 2531551 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 1245988 12871484 ~ 12897931 (+)
G73533 NA other downstream 3023333 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 3266038 14891534 ~ 14921003 (+)
svip svip other downstream 3946806 15572302 ~ 15577533 (+)
G74169 NA other downstream 4661180 16286676 ~ 16288329 (+)

Expression


Co-expression Network