G72946


Basic Information

Item Value
gene id G72946
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11812999 ~ 11818238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98379
GTACTGAATATCTTCACAACTAAGAGAGTGACTATTTTCTGGCACAAAGACACATTGCTTTCTAATAGCTTTATAATGAACACTGGCAAGCACTGTTAGCAGgcctttaaatataatttaaaaaaggacaGATAATGGGCCAGAAAATGCTTCCAGCTCTGTAATTTATCAgctgctttaaagctttaaagtgCTGAGTCAATCTGGAGGTCAAACTGTGCAAATGCCACACGCCCGGCCGTCACTATGGACGACAAACTATCAACACTAGAGAAGCAGCAGGGTTTATCTAGAGTTATCTAGAGAAAAACAAAAGGTGTTGTGGTAGGAGTCAGTGGTAACCAAGAGTTTTTCTGAAGATCTACCTTTCTGCAATCTCCAACTGATCTGAACCATCTCACTGTCAGGCTTTGCCCCTATGTCTATTTTGTCTGTGGTTTTTATCTctttgtgttggtgtgtctgtTATTCACAGTCCACATGTACATACACTGTGTCTCAATTTTACTATACACTAATTCTGTCAAAGAGACTATATAAAgattagtatatagtatatactatactgtaaatgaacctttatttagtcattttaacAGGTTAAATTCTTCAGCTGCAGTTGCCTCTGCACTTGCATAAATATTCTAGTGCTATACGTGAGTATATATTGTACTCTATATAGTTCACTTTATTTTGAGGTatatttaattttcacaaatatTGACTAAATGAAAATCAGGGCTAAAATAGTGTAGTGAATCTGTGAAATCTTGTTAATGTCATCAGAAGTCAAAAAACACCCTTCAGGAATACCATATCATGGAAGATGGAAATAGGTGAGTAAGAACTCTACAACACATGCAGCTCTATAAGTACATCCCCCCAGGAACCAAAGATAGAACAGCACACAGAAGATACTCAGAGGAACAAACAAAGGAAGATATTACTCTGGTTACTTGTTTCTTGTTGGATTTAAAGGACGTATTGTACACCACCATCCGTTTCAGCATCTGTGGCGACTGCGACATGGAATGAAATGATGATTAGTCTTAGAAAACACAAACCTTACTacgtcaacacacacacacacacacacccaaagaGGACTACCTCACTTTCCCTCTTTACATTATATCCCAGTGGGACATTCTTGCAATTAAGCGGCATCCAAGTGGCACAAACACACAGGCTGCCTTAGTgctctttaaataaatgtggcGTGGGAATTGGAGGACAGGAAGAAAATACACCTGCCTCCAATCGTTTTCTTCCATGTTATATTAGATCTAAGATATTGGGCTGGTATGGACTAGCCAGGGAGGTCCTTGCTTAACATTTATTGAGGATGTGATATGCTTTAATAATAAAGATATCAAACTAAGGCCTCTGGAGGTGATACCCCCACtagaacattctaaaaaaatattttacatcttTTTCATTGTTATTTATACACATGATACTCAAAACAAATGTAAGCAGTGGCTGAGCCAGACaggataattacattattgatttattgtacaatttGCTAGTTTGGAACATGCCACCAGCTTGTGCTTAGTCTTTGCAACTATCAGCCATCCTAAATATTCATAAACATGTGAACGAATTTGAGTAAATGTTTAGGAATACAAGGGGCATGTTCCTCTGTTACAACACTGATATTTTCATAACAACactacagttctggaaaaaattagaccacttaaaaatgataagtttctttaatttgaccaaattgaaaacctctgtaatataatcaagaggaagatggatgatcacaatgaATCACATTAAacctgaactgtttgaatttttgtgccaggagtggcataaagttacccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgaaaactgattaaaaaccagagttattttaacaaatattgatttctgatctcttaaaactttatgaatatgaacttgtttactttgcattatttgaggtttgaaatgtttttgttatttcagccatttctcattttctgcaaataaatgctctaagtgtttattttggaatatttttatatggaatttgggagaaatgttagaataaaacaacaatgtcaattgtactcaaacatatacctataaacagcaaagttaaggaaactgattcagaaactgaagtggtctcttaattttttccagagctgtatatgaacataaacacctcaataataCTCCTTGTGTTTACTAGAGCTCCTAACCATGACTGAGCTAATATGCtgggttttttttaaacaatgtttttattttatttgtggatatttttattagtttaagaTATTTAGACGTTTTATACTTCCAGCAGTGGCAAGATATTGCAGATACGATTCTCCAACTCTACCTTAAGGCAATGTTGGAGTCAGATAGATAGAGAAGTAATCATGGCAAGGCTCAGCATCCGCAGTTTGTGGGGATTTAATACAATCAGGCAGGATGGCTTAGAGGGTATCGGGGCAGAATTCTAAACACTATCAATCAGACTTTACACTTTAGTAATGATTCATGTGGTGAACAAGAGCCTGTTTCCCGGTCACGTTTACACTCTCTTCACCCTTTACTTTTCTCTGCcgcttccctctctctccccttaGCTCTTAgatctatttttctctctccctcgctctcttcTGCTCTCTTCCCCCGCCTCTCTCTAATACACTCATTCCCTGAGGAGGAAATGCTCATTCTCAGTGGTGGCCTCATAAATCTGCACAGTACGGGAAATGCGCACCCTGCATTCAAAGGGAGGTTAGTTGTGAAGGTTTCCCACCGTCAGCACTCTCCAGTTAGTAAGCAAATTGCAGTGTCATTTGGTCGAGTGTAGAAAATGCCTGCAAATTATCTTAACAAACAATATTAGGTGTGTGTAAATTGCAatcatattgtaatatttttttttgcaatactgcATTGATTTTTCTTctactcagattttataaatatgatagtgtttttgtatgatttatactaaaattttacttaaacaatcACAACATATTCATTAACataatatacagttctggaacaaaataagagaccacttcagtttctgaatcagtttctctgattttgctatttatacatttgagcaaaatgaacattgttgttttattctataaactatgaacaacatttctcccacattccaaataaaaatattgtcatttataaagttttaagaattcagaaatcaataattggtggaataacagtgttttttaatcacagttttcatgcatattgacatgttctcctccaccagtcttacacactgcttttggttaactttattccactcctggtgcaaaagttcaagcagttcagcttggtttgatggcttgtgtccatccatcttccttttgattacattccagaggttttcaatttggtaaaatcaaagaaactcattatttttaagtagccttttattttttctagagctgtatatttaaatgcaacccCTGTATCATGATACGTATCGTATTACCAAGTTCTTGCCAACACACAGCCctaatcaacacacacacacactcaatctcAGACTCACCGTGGGTTCTGGGCGTAATACAGGTCTGTTTGGGGTTTGAGATTGGGGCAGCATGACTGGTTTTGACATGACTGGGTTTATCTGTCTCCTCTGGGATGGAGGGCTTGGGGCCATTTGCTATAGATTTGACCAGAAATAGACATTAGGCATATGTGGGAACAGCAATCAGAAGGTCACCTTCAGCAAGCAATTTGTGACCTGCGTAATTCAAactacacacagagagagagtgacccTGAAATCCAGGGTGTATAGACTGAAGGTTTTTTCCAGATTAAGATTAAAGGAAAAAAGTCAATAAGCACACTGCATCCAATATGAACACAGGGTCCACTATGAATTAACTTCAAGGGGCTCCGATACACAAACTGCAAGCATCCTCTGATCAAAGCAGAGGGTATATGGCTCACCAGTGAATTGCTGGACGTTGATATTCTGCTGGCATGAGAAGTGTTTCTCATAACCTAGGCCACATCGATAACATGTCAGAGTAGGaaggaaaaaatgtaaaagcaagACATTCATCAGCATAAAGGTAGAACATAAAGTGAATCCCCCAACACAGAACAGGTCAATCTCCTCTCTTTTAGCCCTCACAAGCAATCTTACACAATCAATGGCATTGTTATGCTAATGCACTGGGCATCACAGGCCTTGAATGCACGTCACACAAGCTAAAAACTAATGCAATCAGCCAGGACACAATACCACAATACTACACAAAGACAGCTCATTTGGGAGGAGGGAGGcccttttgtccttttttgtcCTTGTCTTTTGTCTCTTGAGGCTTGATAGTCATGATTATTAGATTTATATGGCAACAATCCAATCCCACACATTAGTATTGATACTCCAATACTCTATACGAGGCTAATAACATCAGACAATACTATGTCAGATACTGGAAGatagaaataatcaataatatacAAGAGGGAGTGCAAGAAAGTGAGATATGAAAGTTGTAGCTATagttaagctatatttaaacacaacaacaagtatgtgttttaaacacctttttaatacacttgaagtatattgtaaatgtactactttgcctattgatgcacatatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98379 True 4681 lncRNA 0.37 2 11812999 11818238

Neighbor

gene id symbol gene type direction distance location
LOC103029705 mob2,LOC108411394,LOC108274974 coding upstream 79804 11665815 ~ 11733195 (+)
LOC103028645 LOC108428835 coding upstream 178406 11563332 ~ 11634593 (+)
LOC103024122 LOC108439251,LOC100136550,LOC100304637,LOC107675272 coding upstream 680722 11123179 ~ 11132277 (+)
th th,LOC108274586 coding upstream 696369 11105654 ~ 11116630 (+)
LOC103022764 uevld,LOC108275186 coding upstream 764601 11037500 ~ 11048398 (+)
LOC103038976 LOC108428833 coding downstream 107749 11925987 ~ 11938380 (+)
myod1 myod1,myod coding downstream 121286 11939524 ~ 11941817 (+)
LOC103034044 NA coding downstream 137386 11955624 ~ 11963784 (+)
znf469 NA coding downstream 547127 12365365 ~ 12417357 (+)
LOC103039191 LOC108428816 coding downstream 640307 12458545 ~ 12485409 (+)
G72905 NA non-coding upstream 133177 11610470 ~ 11679822 (+)
G72893 NA non-coding upstream 187503 11567577 ~ 11625496 (+)
G72882 NA non-coding upstream 290338 11521012 ~ 11522661 (+)
G72876 NA non-coding upstream 586813 11224794 ~ 11226186 (+)
G72875 NA non-coding upstream 589995 11222774 ~ 11223004 (+)
G72993 NA non-coding downstream 125739 11943977 ~ 11951765 (+)
G73001 NA non-coding downstream 159970 11978208 ~ 11978882 (+)
G72992 NA non-coding downstream 214845 12033083 ~ 12050540 (+)
G73029 NA non-coding downstream 307395 12125633 ~ 12126858 (+)
G73031 NA non-coding downstream 312324 12130562 ~ 12130798 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 1186035 10272919 ~ 10626964 (+)
G72621 NA other upstream 1730859 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 1842957 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 2663580 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 2776973 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 1053246 12871484 ~ 12897931 (+)
G73533 NA other downstream 2830591 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 3073296 14891534 ~ 14921003 (+)
svip svip other downstream 3754064 15572302 ~ 15577533 (+)
G74169 NA other downstream 4468438 16286676 ~ 16288329 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G211817 NA non-coding CI01000049 null 9609619 ~ 9617855 (+)
mexican tetra (Astyanax mexicanus) G177392 NA non-coding NC_035916.1 CM008319.1 19015385 ~ 19016720 (+)