G72974


Basic Information

Item Value
gene id G72974
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11734144 ~ 11734846 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98410
aaatagcaaaatcagagaaactgattcagaaactgaagtggtctcttatttttttccagagctgtatatctgctGTATGTTAAAAGTTCACTGTTCTGCATTAGGATTTATTGCTAAAAAATAAACCTAGCGTTTTAAGGgttaatgcacaaaaaagtacaaaataatatgaattttaatatCTTGGAGAAACTGAGTTTCATATGTTGTATATCACAGAACATATGCAGCGTTCTGTAGCCAGATATAGATGCGGGTCAAGGCTGAGATGATGTGTTCAGGGCTGAGGCAGGTTTTCTTGCTATTGCTGAAGGTCAGTGCCACGGCAAAGGAAGCCATGAAATGTGATCTGCATCAAGGAGACTGCAGCAGAACCCACAACTGAACACACTGTATCTGCACAACAGACCTATagagattttatatttatttggccaccaaatatccactattatttaaaatatttttattttcactctgttCCAGACCTGTGAGTAATCTGTCTGTTATGAAAAAagcaatattttgtatttgcttCTCTTTTTAATACACCCCAGGCTTCATAAATGTCATGAATTCCCAAAGTGCTCTGCTGTCAAATATTAGATTTTCTGTCTCTGAATATCAGACATGCATGTTTGAATGCAGATTTCTCTCAGGGTATTAGATGCTtgaatgcattatattattagTCTGCCATAGC

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98410 True 703 lncRNA 0.36 1 11734144 11734846

Neighbor

gene id symbol gene type direction distance location
LOC103038359 NA coding downstream 649465 11049697 ~ 11084679 (-)
tmem86a tmem86a,LOC107707555,LOC107709947,LOC107688565 coding downstream 705494 11008621 ~ 11028650 (-)
b4galnt4 b4galnt4,LOC108439245 coding downstream 768962 10725524 ~ 10965182 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding downstream 1016160 10630846 ~ 10717984 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding downstream 1500947 10223118 ~ 10233197 (-)
kcnj11 kcnj11,LOC107758740 coding upstream 2437 11737283 ~ 11739371 (-)
abcc8 abcc8 coding upstream 5116 11739962 ~ 11804035 (-)
LOC111193095 NA coding upstream 32663 11767509 ~ 11776139 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding upstream 70971 11805817 ~ 11834740 (-)
LOC103031503 tnnt3b,LOC108428830,LOC108275000 coding upstream 209579 11944425 ~ 11953789 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding downstream 995 11694678 ~ 11733149 (-)
G72881 NA non-coding downstream 502466 11231179 ~ 11231678 (-)
G72857 NA non-coding downstream 601871 11079088 ~ 11132273 (-)
G72847 NA non-coding downstream 695999 11037508 ~ 11038145 (-)
G72845 spty2d1,LOC107688563 non-coding downstream 699367 11033157 ~ 11034777 (-)
G73030 NA non-coding upstream 390690 12125536 ~ 12126823 (-)
G73098 NA non-coding upstream 459727 12194573 ~ 12196578 (-)
G73119 LOC108428815,LOC108428741 non-coding upstream 768017 12502863 ~ 12539230 (-)
G73125 NA non-coding upstream 775195 12510041 ~ 12510921 (-)
G73159 fanci,LOC107670230 non-coding upstream 838465 12573311 ~ 12574584 (-)
LOC111193052 NA other downstream 188898 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 508190 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 1571660 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 1680110 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 1831251 9856399 ~ 9902893 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 313780 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 813844 12548690 ~ 12564978 (-)
G73172 NA other upstream 875988 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 2807350 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 2974212 14709058 ~ 14797283 (-)

Expression


Co-expression Network