G73081


Basic Information

Item Value
gene id G73081
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12445693 ~ 12448514 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98551
ActttattatacattaaataGGAGTGATGAAAACAAtggccaaaaaaagaaaaagaataataaTAATTCATTATGGGGTCAGAACAGTGGTCATTTACTCACAAATGCACCTTgcacgcacgcacgcacacacacacacacacttctctcacATTCACATCTTCACACtctcccttacacacacacatacatacaccagTCACTAACAGAGTGCATCTCTAAACTCTCATAAAGTGACattcatttaaacaaacaaaaaaaagcacaatttacAAAATATCCATCTTTCAGTATCACAACTGTACAAAGGTTGTTAAAATACGTTTTGCTATTGGCACACCAAAGATGGGGAAGGGGTGAGAGAATGAAAAAAGagcgagatagagagaaagaaaaaacatttccaCATATTCTACTGCTAACCAGAGTGCTATAAGGTTACCTTATTTTAAAAGAAGAGGCAACCAAACAGCTCAAAATACCCAATACCTGCATTAACATTGCATAATAATGTTGATCCTGATTTGTGTTTTCAGTTTGTATGTTAGCCTCCTTGAGATGCAGCATTAGCAATAATtcaaacaaattaaattgaGTAATATATAATGgctgcaaatgaaaaaaaaactatgattaagGACCCATggtacaaaataaagaataaaaaaagaaggcaacattgtttttgtatgattttttttaacatctctTGCGTCAGAAATGTTACTATTTTTTAAGGTAAGTATTGCCATTAAATGTTCACAACAGCCATTCAGTTTTAAATGAACCACAAAAGGCAGTCCTGCAAAACTTATTCTGGAAAGACTTTGAAAAATCAGACCACGCTGCATTCTTTCACTCATTCACCCACGTTTCTGCTTGGCCTCAGAAAACATGCACGTGAtgagaaacacaaacaataaGAATCTGAAGGGCATCAGCACAGCCAGTCTAAATATCAGCCCTTAGACAAGGCATTTGGTTGATCCATTTGTTGACCTCCCCTCCCCTCTGCATATTTGCATCAGTTCATGGATAATATTCagaataatgtttataatggtTAGTTGCCCACTTTGACATCCTAATATCCTTTGCAGAGAAAGAAAACTCCATCTAGAAAATATTTTGGCTGGGTGCAAATGAGTGCATTTTATGTcaacatcttaaaaaaaaaaaaaaaaaaaaaggagaggagaggaaacaTAGGCCTCCACTGGTTTTAAACATTAGAAACTCTACAGTCTAAGATTATGTCCACACATATCTGTGTATTAAAATTCTCACATTTACTTATAAAATTATTTCTGTACATGTAGTGTAGTATGCATGTCACAAACTCTAAATCAAAACAAAGccgtgtgtgtgtaaaaaacagTAGCATACAGGTGTTCAATAATATTTATGAATTTTGACAAACACTAATTGAGATTCGAATTCCATTTTTAGAGACCACAAATTAGGTCAAAAGCAGTTTGAATATGGACAGGAAGCTAAAACagatacatctttttttttttttttttaaatattcagatGTGTGTGGACAGGTCCTTAAACTACTATGCTTCTTCttggaaccaaaagtggttcatCTACAGCATCAGACAAAGAACCTTTTGAAGCATATATCACAAACCTTAGCTCTATGCTGCAGAAACCCATGTTTCAgaccattttttctttactccaACACCACTTCTTTTAGTGTGTCTAGTACTGTTAGTCTCTAAACTCAACATTAAAACCAGAACAATAAACTTGAAAAGACGGTAAATAATAAATGCTGTGAAAGAATGCAATGTAGACATGTTAAAGGGCGCACGGGCTAAAACTACCCCACTTACACAACATTGGCTGTTTAACACAGTATTTTAAAACTCTTTGCTTTTCTCGAGGAGATTACAGAAAAGAACAgcatgcaattgaaaaaaatcaaAGTTTAGAGCTTACAACCGACACACTTTTAAAGGCTGACATGGATCTGTAAATAGACTAGAATGGAAGCCTGCATGCTTGTGTTACACAGTGGTGGagctatattataataaaaaaaaattaaaaaacacccCAAACAGCGTTGGTCCTACTTTAAGACGCTTCAATATGCCTGACACTTTCAAATTTGAAAAGTTGTGCAAACcattaaatacattacaaaaaTTTTCCAAATCACTGCCTTGTTGCCGTTAATATCAGTACAACGATTAAAAGCAATAGTTCAATGCATTCCTTGCACTGCATGCACTTGTTTGCGCTATGGCCCTAAATCATACATCCAAATATTCACTTTTAAAATTAAGAGGCACATATTTGTGTGTTGCCTATTTATGCATATTCTGCTAAATACGATTAATCTGCTGGATTGGAGCAAtttagggaagaaaaaaaaaaacacctaatattcacaaacaacaaaagaaaagcaaaaaaactaataaaaaaataatttcacaacTTGTACAGTCAACAACAATGCAGGACCAACACTTTGGGGCAACTGGCACCAGACAAGAAAAAGCTTATTTGTTTGTAGAGAGCAAATGTATGAAAACCGCGATCCGTTCTGTATGTTGAGGCTAATAATTTAGTGTAATGTACAAAATGCAGTTCTTTCATATTTCAGCTGTTCAGAGTCGATACTGAAATGGAGGCATTATTCACATTAGTATACACTTTGTCTTggacttcttttttttcttcttgcctTCCTTGCTCATCTTCTCCTTGTGCTTTCGAATTTCTCGGACTAATGTGTAAAAGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98551 True 2766 lncRNA 0.35 3 12445693 12448514

Neighbor

gene id symbol gene type direction distance location
znf469 NA coding upstream 28336 12365365 ~ 12417357 (+)
LOC103034044 NA coding upstream 481909 11955624 ~ 11963784 (+)
myod1 myod1,myod coding upstream 503876 11939524 ~ 11941817 (+)
LOC103038976 LOC108428833 coding upstream 507313 11925987 ~ 11938380 (+)
LOC103029705 mob2,LOC108411394,LOC108274974 coding upstream 712498 11665815 ~ 11733195 (+)
LOC103039191 LOC108428816 coding downstream 10031 12458545 ~ 12485409 (+)
LOC103039298 NA coding downstream 42070 12490584 ~ 12547678 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 coding downstream 120323 12568837 ~ 12587543 (+)
trnar-ucg_4 NA coding downstream 154838 12603352 ~ 12603424 (+)
man2a2 man2a2,LOC107750719,LOC107720774,LOC107670215 coding downstream 231592 12680106 ~ 12715658 (+)
G73045 NA non-coding upstream 248983 12194572 ~ 12196710 (+)
G73031 NA non-coding upstream 314895 12130562 ~ 12130798 (+)
G73029 NA non-coding upstream 318835 12125633 ~ 12126858 (+)
G72992 NA non-coding upstream 395153 12033083 ~ 12050540 (+)
G73001 NA non-coding upstream 466811 11978208 ~ 11978882 (+)
G73082 rask,kras,LOC108274959,LOC105900436 non-coding downstream 1972 12450486 ~ 12456004 (+)
G73091 NA non-coding downstream 109120 12557634 ~ 12557852 (+)
G73146 fbxo31 non-coding downstream 115619 12564133 ~ 12564792 (+)
G73177 NA non-coding downstream 190731 12639245 ~ 12641822 (+)
G73189 unc45a non-coding downstream 215453 12663967 ~ 12669729 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 1818729 10272919 ~ 10626964 (+)
G72621 NA other upstream 2363553 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 2475651 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 3296274 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 3409667 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 422970 12871484 ~ 12897931 (+)
G73533 NA other downstream 2200315 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 2443020 14891534 ~ 14921003 (+)
svip svip other downstream 3123788 15572302 ~ 15577533 (+)
G74169 NA other downstream 3838162 16286676 ~ 16288329 (+)

Expression


Co-expression Network