G73082 (rask,kras,LOC108274959,LOC105900436)


Basic Information

Item Value
gene id G73082
gene name rask,kras,LOC108274959,LOC105900436
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12450486 ~ 12456004 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98553
tgCGCCAGCAGCTATTTAAAAATGACTGCAGTAATAATTGCTCATTAATTGCCTGATCTTAGTTTAAATCCTATTAAACATGCTCTGGCTAATTGagtttttcctccttttttcaaCTGATTTATGAAACTGCTTTGCATCATAAGAGTCATATTTGCACATTTTGCAGGTGTTGTGTACCTGTCTCGTTTTTGCTGAGGTCTCGATGAAAGGAATTCCATAGCTGCGTGCTAAATCCTGAGCCTGCTTAGTATCCACCGTACGTGACGGCAGGTCACACTTATTTCCCACCAGCACCATGGGGACGTCCTCAGAGTCTTTCACTCTCTTAATCTGCTCTCTGTAGTGGTGAATGTCCTCAAATGACTTTGTGTTATTGATTGCAAAGACACAGAGGAAGCCCTCTCCGGTCCTCATGTACTGGTCTCTCATGGCGCTGTACTCCTCCTGACCTGCTGTGTCCAGGATGTCCAGTAGGCAGGTCTCTCCGTCAATCACCACCTGCTTTCTATACGAATCCTCTATAGTTGGGTCGTATTCATCCACAAAGTGGTTCTGGATGAGCTGGATGGTAAGAGCGCTCTTGCCCACACCTCCAGCACCCACCACCACCAATTTATACTCAGTCATTCTTCACCCAGGGAGCAGTGCACCACAGCACGGGCGGGCTTTCCTGGCTCGTTTCGGTACTTCCTAAAGGCTGGACGACAAGCCTAAAACGTGTACATGAGCTGCGCAGCCCTCTCgacctgctactactactaattccAAGCCTCAGCTTGCATCTTTCATTCTGCACGCTGCTGCTGCCTTAAGGGCACACTGTGACCAGATCGATATCCCTTCAATAACAGGCGATGCAGAACAATGCAGCTCGACAGGGCGTCATCGGTTCATACTAActtttaaaaatagcttttcAGAGCTTTTACAGACAACCCCCTTTAAATCACTGCAGGCTTGTCGGTGCAGCCTAACCAAACGAAGCAAAGCGAAAAGTCAGCACAGTGTTGTAACCGGCTTTTGACAAGCACCATTGAA

Function

symbol description
kras Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis; heart development; and hemopoiesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in brain; heart; liver; pleuroperitoneal region; and trunk musculature. Human ortholog(s) of this gene implicated in several diseases, including Noonan syndrome (multiple); arteriovenous malformations of the brain; cardiofaciocutaneous syndrome (multiple); gastrointestinal system cancer (multiple); and hematologic cancer (multiple). Orthologous to human KRAS (KRAS proto-oncogene, GTPase).

NR:

description
GTPase KRas

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98553 True 1041 lncRNA 0.47 4 12450486 12456004

Neighbor

gene id symbol gene type direction distance location
znf469 NA coding upstream 33129 12365365 ~ 12417357 (+)
LOC103034044 NA coding upstream 486702 11955624 ~ 11963784 (+)
myod1 myod1,myod coding upstream 508669 11939524 ~ 11941817 (+)
LOC103038976 LOC108428833 coding upstream 512106 11925987 ~ 11938380 (+)
LOC103029705 mob2,LOC108411394,LOC108274974 coding upstream 717291 11665815 ~ 11733195 (+)
LOC103039191 LOC108428816 coding downstream 2541 12458545 ~ 12485409 (+)
LOC103039298 NA coding downstream 34580 12490584 ~ 12547678 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 coding downstream 112833 12568837 ~ 12587543 (+)
trnar-ucg_4 NA coding downstream 147348 12603352 ~ 12603424 (+)
man2a2 man2a2,LOC107750719,LOC107720774,LOC107670215 coding downstream 224102 12680106 ~ 12715658 (+)
G73081 NA non-coding upstream 1972 12445693 ~ 12448514 (+)
G73045 NA non-coding upstream 253776 12194572 ~ 12196710 (+)
G73031 NA non-coding upstream 319688 12130562 ~ 12130798 (+)
G73029 NA non-coding upstream 323628 12125633 ~ 12126858 (+)
G72992 NA non-coding upstream 399946 12033083 ~ 12050540 (+)
G73091 NA non-coding downstream 101630 12557634 ~ 12557852 (+)
G73146 fbxo31 non-coding downstream 108129 12564133 ~ 12564792 (+)
G73177 NA non-coding downstream 183241 12639245 ~ 12641822 (+)
G73189 unc45a non-coding downstream 207963 12663967 ~ 12669729 (+)
G73191 NA non-coding downstream 218982 12674986 ~ 12676348 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 1823522 10272919 ~ 10626964 (+)
G72621 NA other upstream 2368346 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 2480444 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 3301067 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 3414460 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 415480 12871484 ~ 12897931 (+)
G73533 NA other downstream 2192825 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 2435530 14891534 ~ 14921003 (+)
svip svip other downstream 3116298 15572302 ~ 15577533 (+)
G74169 NA other downstream 3830672 16286676 ~ 16288329 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000120_00639875_00643491 RASK, KRAS coding CI01000120 null 639051 ~ 643520 (+)