G73098


Basic Information

Item Value
gene id G73098
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12194573 ~ 12196578 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98587
actgcgacgcccctctgccgctctgccgctcactgcctcccacctcctaactgatgagcggtgatgttgcgtcgcttcagctccgcctctgggagtttctcgagccaaggtgggctggtctgtgagtttctgcctacgtaggcagaaagataattcaaaattcacccgtttttcggagggggggaggggggatttctttgcttagctcctgcagacaatgggggctgcaaaacagtttaatgtgcaggtgtacacattcaactcggagagacctactgtattccacaaaaaacaagaaaaatcggattttcgcggaaggtgagctttaataa
>TU98588
actgcgacgcccctctgccgctctgccgctcactgcctcccacctcctaactgatgagcggtgatgttgcgtcgcttcagctccgcctctgggagtttctcgagccaaggtgggctggtctgtgagtttctgcctacgtaggcagaaagataattcaaaattcacccgtttttcggagggggggaggggggatttctttgcttagctcctgcagacaatgggggctgcaaaacagtttaatgtgcaggtgtacacattcaactcggagagacctactgtattccacaaaaaacaagaaaaatcggattttcgcggaaggtgagctttaataa

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
TU98587 True 332 lncRNA 0.52 2 12194573 12196578
TU98588 False 332 lncRNA 0.52 2 12194573 12196578

Neighbor

gene id symbol gene type direction distance location
LOC103035544 LOC107742058,LOC107675302,LOC107595230,LOC107758756,LOC107549283,LOC108275297,LOC107675455 coding downstream 153511 12036675 ~ 12041062 (-)
LOC103034366 tnni2,LOC103034366,LOC108428827,LOC107742057 coding downstream 158526 12033289 ~ 12036047 (-)
LOC103031193 LOC108428829 coding downstream 198372 11957570 ~ 11996201 (-)
LOC103031503 tnnt3b,LOC108428830,LOC108275000 coding downstream 240784 11944425 ~ 11953789 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding downstream 359833 11805817 ~ 11834740 (-)
LOC111193054 NA coding upstream 146897 12343475 ~ 12348986 (-)
LOC103038241 kras,rask,LOC105900436,LOC103038241,LOC107675271,LOC108428819,LOC108274959 coding upstream 249098 12445676 ~ 12456034 (-)
LOC103039697 NA coding upstream 289068 12485646 ~ 12489180 (-)
polg polg,LOC107557431 coding upstream 390661 12587239 ~ 12602241 (-)
rhcg rhcg coding upstream 442293 12638871 ~ 12651916 (-)
G73030 NA non-coding downstream 67750 12125536 ~ 12126823 (-)
G72974 NA non-coding downstream 459727 11734144 ~ 11734846 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding downstream 461424 11694678 ~ 11733149 (-)
G72881 NA non-coding downstream 962895 11231179 ~ 11231678 (-)
G72857 NA non-coding downstream 1062300 11079088 ~ 11132273 (-)
G73119 LOC108428815,LOC108428741 non-coding upstream 306285 12502863 ~ 12539230 (-)
G73125 NA non-coding upstream 313463 12510041 ~ 12510921 (-)
G73159 fanci,LOC107670230 non-coding upstream 376733 12573311 ~ 12574584 (-)
G73162 fanci non-coding upstream 382280 12578858 ~ 12582454 (-)
G73173 NA non-coding upstream 417028 12613606 ~ 12620513 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 143084 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 649327 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 968619 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 2032089 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 2140539 10051952 ~ 10054034 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 352112 12548690 ~ 12564978 (-)
G73172 NA other upstream 414256 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 2345618 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 2512480 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 2927236 15123814 ~ 15214284 (-)

Expression


Co-expression Network