G73119 (LOC108428815,LOC108428741)


Basic Information

Item Value
gene id G73119
gene name LOC108428815,LOC108428741
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12502863 ~ 12539230 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98615
CGGACTCCTTCCCATGCTTCTGCAGGCTGTGGTGGGGCGAGTCTCAAAGGGCCCAATGGTGGCTTTGCAAACGGAACACCCAGGTAGCTGTGGACGATCGTGTCCTTCCCTTTAGCCGTGAAATACTCACCTTTTAGAGCCCCTAGTTTAGTCTGAACAACAGGTCCTGTCATAGCatctttcttctctcttatcAGGCGTGGAAGAGTCTCGGTTAGGAAAGTATAGTGTTTTCCCTTCAGGTTCTTGGCAGGTTTCTGCTCCAGTCCAATGGCCAGATACTCAGCATCAGCTCCATGCTCAGGCCATGGTGTCAGACCCGGTCCATTTGGTGAT
>TU98619
ACATGTTGGGCTGCTGTGTGGCGTCTCGGACTCCTTCCCATGCTTCTGCAGGCTGTGGTGGGGCGAGTCTCAAAGGGCCCAATGGTGGCTTTGCAAACGGAACACCCAGGTAGCTGTGGACGATCGTGTCCTTCCCTTTAGCCGTGAAATACTCACCTTTTAGAGCCCCTAGTTTAGTCTGAACAACAGGTCCTGTCATAGCatctttcttctctcttatcAGGCGTGGAAGAGTCTCGGTTAGGAAAGTATAGTGTTTTCCCTTCAGGTTCTTGGCGGGTTTCTGCTGCAGCCCAATGGCCAGATACTCAGCATCAGCTCCATGCTCAGGCCATGGTGTCAGACCCGGTCCATTTGGAGATCTACACTCAGTCACACATAGAGAGAAAATTACAGTGTTAATAGGTCCACATGATGTTTACTCTACTGTGGGAAAAGTGGGTCATCTTGTGACAtttatttaaagccttaatgaAGCAGTGCTCTGTATGAAGAGTTTCCTTAGCCGTCAAGCACACCAACACCTCTCATCTGGTT
>TU98621
ACATGTTGGGCTGCTGTGTGGCGTCTCGGACTCCTTCCCATGCTTCTGCAGGCTGTGGTGGGGCGAGTCTCAAAGGGCCCAATGGTGGCTTTGCAAACGGAACACCCAGGTAGCTGTGGACGACCGTGTCCTTCCCTTTAACCGTCAAATACTCCCCTTTTAGAGCCCCTAGTTTAGTCTGAACAACAGGTCCTGTAAACAAGCAATGTAGTTTACAAGTGATATACATTAATGGTCTGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC108428815 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98615 False 336 lncRNA 0.52 3 12515554 12530270
TU98619 True 537 lncRNA 0.49 5 12502863 12539230
TU98621 False 240 lncRNA 0.51 3 12511512 12539230

Neighbor

gene id symbol gene type direction distance location
LOC103039697 NA coding downstream 13683 12485646 ~ 12489180 (-)
LOC103038241 kras,rask,LOC105900436,LOC103038241,LOC107675271,LOC108428819,LOC108274959 coding downstream 46829 12445676 ~ 12456034 (-)
LOC111193054 NA coding downstream 153877 12343475 ~ 12348986 (-)
LOC103035544 LOC107742058,LOC107675302,LOC107595230,LOC107758756,LOC107549283,LOC108275297,LOC107675455 coding downstream 461801 12036675 ~ 12041062 (-)
LOC103034366 tnni2,LOC103034366,LOC108428827,LOC107742057 coding downstream 466816 12033289 ~ 12036047 (-)
polg polg,LOC107557431 coding upstream 48009 12587239 ~ 12602241 (-)
rhcg rhcg coding upstream 99641 12638871 ~ 12651916 (-)
gdpgp1 NA coding upstream 119663 12658893 ~ 12661807 (-)
unc45a unc45a coding upstream 123511 12662741 ~ 12674522 (-)
LOC103043208 furin,furinb,LOC107581806,LOC107720773,LOC107750721 coding upstream 183047 12722277 ~ 12871382 (-)
G73098 NA non-coding downstream 306285 12194573 ~ 12196578 (-)
G73030 NA non-coding downstream 376040 12125536 ~ 12126823 (-)
G72974 NA non-coding downstream 768017 11734144 ~ 11734846 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding downstream 769714 11694678 ~ 11733149 (-)
G72881 NA non-coding downstream 1271185 11231179 ~ 11231678 (-)
G73159 fanci,LOC107670230 non-coding upstream 34081 12573311 ~ 12574584 (-)
G73162 fanci non-coding upstream 39628 12578858 ~ 12582454 (-)
G73173 NA non-coding upstream 74376 12613606 ~ 12620513 (-)
G73176 NA non-coding upstream 82452 12621682 ~ 12624418 (-)
G73238 NA non-coding upstream 321883 12861113 ~ 12861628 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 451374 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 957617 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 1276909 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 2340379 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 2448829 10051952 ~ 10054034 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 9460 12548690 ~ 12564978 (-)
G73172 NA other upstream 71604 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 2002966 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 2169828 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 2584584 15123814 ~ 15214284 (-)

Expression


Co-expression Network