CI01000009_05046374_05094978 (SEMA5B, SEMA5BA)


Basic Information

Item Value
gene id CI01000009_05046374_05094978
gene name SEMA5B, SEMA5BA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5046300 ~ 5095973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_05046374_05094978.mRNA
ATAGGTAAGGGGAAATCACGTCTCAAGTCTCATACTTGAGACTAAAAACTTGAGGTGCTTTATGTAACCAGGCACTGGAGAAGTTGCTTACAGTTTCGATGATAGGCAAATATTCCAATTCAGTAGAAAATTCGCTTCTCTTTATAATGTAAGGGTCACGTCCAACATATGTTGTGATTTTCTCTTTATACCTCTCTTGTAATAATGTCTAAACCAGTACATTAAGGACTTTCTTCCATCTCGTCCATTCTGCTTTACACTTCCTGCCTTCCATCTGAATTTTGCGCATCATCAGAATCACGTGATTGTTACAATCAAGCTATTATGATTCAGTCCCATCAGTCGAGTTCACTTGAGCCACAGCATTTATCTGCTTTTCTTCATTGAAGGGTTTCTCAAGGTTAGTGTTTCCTGCTAACCTTCTCATACCCTTAGTGAGCCATACAAACAAATGGACTATATTTAGAGTTTCAGTCAAGATCTGAAACCCACAGGATCTCAAGGTGGTGGCTTTGTGCTTATAACCGAGTAATTTGTAATAGTTTGTGTGTGTTATTGTGCACATGCCCACCGTAAGACAGCAGGATTGCAGTTTTTAAGTGCTGCCTCTGTTATTGTTGGCTGGACATGCAGCTCTAAGGGGGCATAATTGGGCAGAGGAAAATGGAGTGGCTTGTGCTGGTGAAAAAAAGAGAGAAGACGACGAGGTCTCTGTGCTTGAATGAGAGTAGGGGATGGTATTTACATGCAAATTGCATCTGGTCTTCCAACTGTCTAGTTACCTCACCCTTTTAAGCCGCTGGCCCAGTTATCATGCTGTTTACACAATAAACACCACAATAAGGTTAATGTCTTTTGATGCATCTGGCTAAATGCAATATTATCATCAACAGTTGCATAACCTGGCTCCAGCTTTATTGCAAACAGCTGCCGGGCAACTGCGAATCACAGCAAGTCACTTTTTTGGGGTTTATTTTGGTTTCCTAGGCAACGGAATGGGGCCCAGACGAAGACACCAGGAGGTCCTGTCAAAGCAAAGGGAAGACGGAGGTAACTTTAAACCCCCAGGTTCTCTGTTGAATAGGCACATTGCTTACAAAATGATGACAGCCCATTGGCCAGAGAGGTTGGGTATTGTTGAGGTGGAGTGTCAAAACTACATTCGCGTGTTGCTTGTCAACAAGACAGAGGTGATCACCTGTGGTACCAATGCCTTCCAGCCCCTTTGTATCACCAGAGAGGCAGGGAACATGAGCAGAGTGTTGGAGAGGGTGAATGGAGTGGCCCGTTGTCCCTACGACCCCCGTCATAATTCGACGGCTGTGGTGACCGAAAGCGGAGAGCTGTACGCCGCCACGGTCATCGATTTCTCCGGCCGGGACCCTGTCATCTACCGCAGCCTAGGAGGAATGCCGCCTCTGCGGACCGCCCAGTACAACTCCAAATGGCTTAATGAGCCTCACTTCATCTCGGCTTACGACGTGGGTCTTTTCACCTTCTTCTTCTTGAGGGAAAACGCAGTGGAGCACGACTGCGGTAAGACAGTGTATTCACGGGTGGCACGGGTGTGTAAGAACGACATAGGAGGCCGATTCTTGCTGGAGGACACGTGGACCACCTTCACGAAGGCCAGACTCAACTGCTCACGGTCGGGAGAGATCCCATTCTACTACAATGAACTACAGAGCACCTTCTACCTGCCCGAACAGGACCTCATCTATGGCATCTTCACCACCAATGTGAACAGCATTGCTGCCTCTGCAGTTTGCGCGTACAACCTCAGCGCAATCACACAGGCTTTTAACGGGCCCTTCCGCTCCCAGGAGAACCCTCGCTCCACATGGCTGCCCACCCCGAACCCCATCCCTAACTTCCAGGCAATAGATAAATTCTATCAGCCTGGCACTGTGAGAGTAATTGCTCAATACCAGCTGGGTGTACCTGCATGCATCGTAATTCACAGTTATTGTCTACTTTCCTATAAAATGACATGGAGAGAAGTTTTCATTTGTTTGGAAAAGTTTTTTTGTGAGTTTATATTTGCACTGCCCTGCTTGACCTCTACACTAATTAATGAGTCTAATCCCAATGACACTTACCAGTGTGGGACCATAGAGGAAGAAGGGCCTAATGAAGGACTAACTGAACGCAGTCTGCAGGACGCCCAGCGGCTCTTCCTCATGAATGACGTGGTTCAGCCAGTTTCTGTGGACCCGCTGGTCTGGCAGGATGATGTGCGCTTCTCTAAGTTGGTTGTTGACATTGTGCAGGGGCAGGACAATTTGCACCATGTCATGTACATAGGCACAGAGTATGGAACTATTCTTAAGGCCCTGGCAACCACAAATAAGAGCCTGCAAGGTTGCTACTTGGAGGAGATGCAACTCTTCCCTCCTGGCCTGCGTGAGCCAATCCTGAGCCTTCAAATACTCCATGGTGACAGGACTCTTTTTGTGGGCCTGAATGACAAAGTGCTCAAGATCCCTCTGGCAAGATGCTCCAGCTACAAAACAGAATTGATGTGTTTGGATGCTCGGGACCCTTACTGTGGTTGGGACCGAAAGCAGCGCCGCTGCACCACCATAGAGGACAGCTCCAACATGAGCCAGTGGTTCCAGAACATCACTGCCTGCCCGCTGAGGAACCAAACCGCAGATGGTGCATACGGGCCCTGGGCTCCATGGCAACCCTGTAGCCATGATGACGGCGAAGGCACCAGTACGTGTCTTTGTCGATCGCGAGCATGCGATAGCCCGTCCCCTCGCTGCGGAGGAATGGAGGATGGACACCCTGGTCGTCCTGGGGCCAGTGCAGCACAAGTTGTGAGATTGGGTTTGAAGTCCGCCAGCGATCCTGTAACAATCCTTCACCCAGGCATGGCGGTCGCGTATGTGTGGGGCAAAGCAGAGAACAGAGATTCTGCAATGAGAAGGTGTCGTGCCCTCAGCCCATCTTCTGGTCATCATGGTCTCCCTGGTCCAAGTGCAGCTCAGAGTGTGGGGGAGGAGTGCATTCGCGCTCCAGGAACTGTGAGAATGGAAATAGCTGTCCAGGGTGTGCGCTGGAATCAGCAACTGGATGATGCCATCAGTGTGTCAATCTTCTCCCTGTTGCAGGAGTACCAGGCGTGTAATCTGGAGTCCTGTCCAGAGGTGCGTCGAAACACCCCATGGACCCCTTGGGTGCCAGTGAACATAACCCAGGGAGGGGCACGGCAGGAGCAAAGAGTACGCTACATCTGCCGAGCCCAACTGGCTGACCCTCATGAGCTCCAACTGGGCAAGCGTAAGGTGGAGACACGCTTCTGCCCCAATGATGGGACGGTAACCTGCGAAACAGACTCTCTAGTTGAGGAGCTTCTCAGAACGCCTAGTGTACGACTGACAGGCTCTGGCTGGTCATCGTGGGAGATGTGGTCAGCTTGTACTCAGGAGTGTTCCAAAGGCTACCGCACTCGCAAACGCACTTGCACCAGCGCAGAGGGCAAAAGCGTTCCCACTGCCTGCCGGGGATCTTCAGTAGAATATCAGGACTGCAATCCACAGCCCTGTCCAGACAGTTTAAGGAGGCTAACAGACAATTTAAGTAAGCTAACAGGCAGTTTAATGGCGCTAACAGACAGTTTAAAGATGCCAAAGGACAGTTTAAGGGTGCTAACAGACCAAGTTAACGGCGCCTGGTCTTGCTGGTCATCATGGTCACAGTGTTCAGTGCCCTGTGGAGGCGGGCACTATCAACGAACGCGCACATGCACCAGCCCCGCCCCTGCCAATGGAGGGGACATCTGCATCGGCTTGCACACAGAGGAGGCCCTTTGCAACACACACACCTGTGATGGTGGGTGGATGGCCTGGTCGGTGTGGTCTGAGTGTGATGACTTGGGCCTGCAGCTGCGCAGTCGTGTGTGCGGGGCTCAATCCACGCCATGTGTGGGAAACAGCTCCCAGCACCGAGACTGCAATGAGATCCCAGGTATAAAACAGGAGACTGTCTTCCTCACCTCTCAGATCTACAGTTCTTTGAATTACCTCACTTCCAGGAAGGTTGCTTTTGAATGGAGATGGTGGAGTGCAATTCTCCCTGCATCTAGCTATGAGAAGGACCAGCAGTGTGGGGGTGGCAGCACATATTACCCATCAGTGTCCAGCAGTGACACTCTCCTGAGTGATCGTTGTCCAATTAGAGCAGTTCATGACGGGGGTATGGCGTTCACTCTCCTCAATCACATTTCGCACTCATTACGGGTCAGACCGGCAAGATGCCTGGTCCGTCACATCGACCGGCTAATCACAGCACTGTCCCTTGGGTTCACTCTGCTTCACCTGATAGCTACGGGTGTGTCGTGCTTCCTGGGTGCCGGCCTGCTGTCCTTCCTGGTGTATGTGTACTGCCAGCGGTTCCACAAGCCCTCGCAGGAGTCTGCCGTCATCCACCCCACCACTCCCAACCACCTCAACTACAAGGGCAACACCACACCAAAGAATGAGAAATACACACCCATGGAGTTCAAGACTGAAAATGGAGATCTGAGTCCCTTTGTAGAGCTATTGTTTGCCAGATGTAGTTCATTGCAAGCCTACATGATCTACTGTACAAACTCATGCCATTTTGGGCTGCTCAAACACAATAGTGGTGCAGATTTTACAACCCTGTGTTTCATCTCAGAGACTGATGTGCCTCTGCGCTCAAAACTCCCATTACTGGAAGGAGATTTTGCTGAAGCTGAAGTTGAAAAACCTTTTTTACTTGCGAATGCATGGGAATTGAGGAATATTGCACCAATATGGAATATGCTTAGGTCTGAAGCAAACATGTTCTACTCTGTTACTATCTTATTTTGGTCATGTGTTCACATGCTTCCCAGCGGCATCACGCCCACATTCCAGATGCAACTCTCCAGTTATCGACAAAAGCGATTCAGGAACGGCAACTCTCATCAGGATGTAGTATTTATGATAATATATGTTGGTCAAATGCGGCTGCTCTGTGTCAGTCGGGTTTTGAAAGGAGAATCTCTGATGTTGAACACGCATAAAGCCAGACGACGCAATGAGGTGCTCCATCCCTGCAAGGCTTGGTGCCCTTCTATGCAACTGACCTGGTGGTTAGATATGCGATGTAGACTGTAATCACTGCCTTTTAGACACTGTGAATTTTTGGTACTCTATATTTTTGTATATTGTACATTGTAAAAGATAATAAA

Function

symbol description
sema5ba Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Acts upstream of or within axonogenesis involved in innervation and sensory perception of touch. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SEMA5B (semaphorin 5B).
sema5b Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to act upstream of or within detection of light stimulus involved in visual perception; neuron projection extension; and neuron projection guidance. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0030335 positive regulation of cell migration biological_process

KEGG:

id description
K06841 SEMA5; semaphorin 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_05046374_05094978.mRNA True 5203 mRNA 0.50 26 5046300 5095973

Neighbor

gene id symbol gene type direction distance location
CI01000009_04976520_04987680 NA coding downstream 58593 4976486 ~ 4987707 (-)
CI01000009_04888729_04895882 NA coding downstream 149821 4888197 ~ 4896479 (-)
CI01000009_04778332_04780190 NA coding downstream 260084 4778053 ~ 4786216 (-)
CI01000009_04738315_04741396 RALB.S, RALBA, RALB.L, RALB coding downstream 303874 4738229 ~ 4742426 (-)
CI01000009_04196309_04197268 DNAJC28 coding downstream 849032 4196309 ~ 4197268 (-)
CI01000009_05110455_05136845 NA coding upstream 14232 5110205 ~ 5138314 (-)
CI01000009_05190789_05192684 NA coding upstream 94521 5190494 ~ 5192890 (-)
CI01000009_05278137_05361256 ADCY5 coding upstream 181164 5277137 ~ 5361478 (-)
CI01000009_05362086_05363378 NA coding upstream 266069 5362042 ~ 5364081 (-)
CI01000009_05367161_05370504 PTPLB, HACD2, DKFZP459B2333 coding upstream 269962 5365766 ~ 5370504 (-)
G53415 NA non-coding downstream 29142 5013895 ~ 5017158 (-)
G53173 NA non-coding downstream 199197 4846901 ~ 4847103 (-)
G53167 NA non-coding downstream 207529 4838462 ~ 4838771 (-)
G53133 NA non-coding downstream 215533 4820723 ~ 4830767 (-)
G53132 NA non-coding downstream 236531 4804438 ~ 4809769 (-)
G53476 NA non-coding upstream 144451 5240424 ~ 5241350 (-)
G53425 NA non-coding upstream 154317 5250290 ~ 5251759 (-)
G53487 NA non-coding upstream 273607 5369580 ~ 5369781 (-)
G53490 NA non-coding upstream 278297 5374270 ~ 5374719 (-)
G52828 NA other downstream 814831 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 1784343 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 2146893 2883688 ~ 2893975 (-)
G52410 NA other downstream 2483767 2551724 ~ 2562533 (-)
G53515 NA other upstream 406422 5502395 ~ 5505248 (-)
G55814 NA other upstream 3329848 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 3762179 8856310 ~ 8860563 (-)
G59097 NA other upstream 7192244 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 8879415 13975099 ~ 13978614 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location