G73162 (fanci)


Basic Information

Item Value
gene id G73162
gene name fanci
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12578858 ~ 12582454 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98694
AGAGAGCACAGGAAGTTAGATACTTTGGAAGGGTACTGCTGTAGCACAGTGCTGAAGACGCGCAGCAAAACCTCAAGACACAGCAGAGAAATGCTCTGAGTCTTCTCCTTCTTCCCAGTATCCTCAACGGCAGATGGAATATTAGTGTACCGCCACATCAGTACACTTGTGATGTCACAGAGGTAGCGGAAGGCCTTGTCAGGACTTTGTCCCTCCGGCCCATCCGTGTGGCCCGTCTCCTCCAGCTGCTGAACCTTCTGTAGGGCCACGTTCACACTGTAGCGCATAAACTCTCCACTGGATCGAAGCACTGACAGACTCTCCTCATGACTCTGAGCGCTGTCTCTGAAGAGAGCAGTCAGCAAGGTGGACACGAATCCCATGGAGAGCAGGCTACGTGGGGGTTTACTATGAGGAGTCCGGCCCTTTCCTGACTTCTCCCTGAGAATCTCAGTCAGCTTCTGATAACGTTTAAAGAGCTCCAGTATCTCCTCAAAACGATTTTTACTGTAGTTGCCTATGGTGAAGTTGTACTCCATGAGAACCTCATATACTCCCATCACAAGCACAGCATAGATACTGTTCTTCACTCCAACACTGGTCGTCATGGAGAAATCAGCAGACTTATCCAGTTCAAAGTCCTCCAGCTCACTCTTAATCATGCGTCTAGTTACACTCTCCAATATTGCATGGAGCTCATCCTGAAAACCTCCTTCATCTTCCtcctcatcatcttcatcatccatTCCACCTCGAGCATTTTCACCCAAACTCTGATGCCACAGCAGGCAGTGGACAGTACAGGAGAACAGGTGAGCCAGAGGTTCCTGGAGGAAAACCTGGTCTCCTTGTG

Function

symbol description
fanci Predicted to enable DNA polymerase binding activity. Predicted to act upstream of or within DNA repair. Is expressed in central nervous system; head; heart; pectoral fin; and rostral blood island. Human ortholog(s) of this gene implicated in Fanconi anemia and Fanconi anemia complementation group I. Orthologous to human FANCI (FA complementation group I).

NR:

description
Fanconi anemia group I protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98694 True 853 lncRNA 0.50 6 12578858 12582454

Neighbor

gene id symbol gene type direction distance location
LOC103039697 NA coding downstream 89678 12485646 ~ 12489180 (-)
LOC103038241 kras,rask,LOC105900436,LOC103038241,LOC107675271,LOC108428819,LOC108274959 coding downstream 122824 12445676 ~ 12456034 (-)
LOC111193054 NA coding downstream 229872 12343475 ~ 12348986 (-)
LOC103035544 LOC107742058,LOC107675302,LOC107595230,LOC107758756,LOC107549283,LOC108275297,LOC107675455 coding downstream 537796 12036675 ~ 12041062 (-)
LOC103034366 tnni2,LOC103034366,LOC108428827,LOC107742057 coding downstream 542811 12033289 ~ 12036047 (-)
polg polg,LOC107557431 coding upstream 4785 12587239 ~ 12602241 (-)
rhcg rhcg coding upstream 56417 12638871 ~ 12651916 (-)
gdpgp1 NA coding upstream 76439 12658893 ~ 12661807 (-)
unc45a unc45a coding upstream 80287 12662741 ~ 12674522 (-)
LOC103043208 furin,furinb,LOC107581806,LOC107720773,LOC107750721 coding upstream 139823 12722277 ~ 12871382 (-)
G73159 fanci,LOC107670230 non-coding downstream 4274 12573311 ~ 12574584 (-)
G73119 LOC108428815,LOC108428741 non-coding downstream 39628 12502863 ~ 12539230 (-)
G73125 NA non-coding downstream 67937 12510041 ~ 12510921 (-)
G73098 NA non-coding downstream 382280 12194573 ~ 12196578 (-)
G73030 NA non-coding downstream 452035 12125536 ~ 12126823 (-)
G73173 NA non-coding upstream 31152 12613606 ~ 12620513 (-)
G73176 NA non-coding upstream 39228 12621682 ~ 12624418 (-)
G73238 NA non-coding upstream 278659 12861113 ~ 12861628 (-)
G73281 NA non-coding upstream 406732 12989186 ~ 13088436 (-)
G73302 NA non-coding upstream 655499 13237953 ~ 13238314 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 13880 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 527369 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 1033612 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 1352904 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 2416374 10101773 ~ 10162484 (-)
G73172 NA other upstream 28380 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 1959742 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 2126604 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 2541360 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 2798875 15381329 ~ 15414613 (-)

Expression


Co-expression Network