G73214


Basic Information

Item Value
gene id G73214
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12947646 ~ 12952320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU98768
TTGACTTCAATTCTAAAAAAGATCGTaaagactacaatacccagaattcAACACGAAACGCGGTTGCCTGAGGAACCGCGGCTGATTTAAGAAGATGCCAGGTTTACAAAGTAACTCAGAGGCAGCCTCACATGATCGGGCTATGATTGAGGCTCTGGAGCAGTTCTGTAACTCTACAGAGCAGTCCTATGAGGAGTTCCTCTCCACCTTCACACAGTTGACCACAG
>TU98771
TTGACTTCAATTCTAAAAAAGATCGTaaagactacaatacccagaattcAACACGAAACGCGGTTGCCTGAGGAACCGCGGCTGGTGGGTAGTGCGAGTTTCTTGCTGTTGTGTTCATAGCTGTTGGTTGTGGTGTCTGTATGCTGTAGTTTTTGAGATTTAAGAAGATGCCAGGTTTACAAAGTAACTCAGAGGCAGCCTCACATGATCGGGCTATGATTGAGGCTCTGGAGCAGTTCTGTAACTCTACAGAGCAGTCCTATGAGGAGTTCCTCTCCACCTTCACACAGTTGACCACAG
>TU98772
TTGACTTCAATTCTAAAAAAGATCGTaaagactacaatacccagaattcAACACGAAACGCGGTTGCCTGAGGAACCGCGGCTGGTGGATTTAAGAAGATGCCAGGTTTACAAAGTAACTCAGAGGCAGCCTCACATGATCGGGCTATGATTGAGGCTCTGGAGCAGTTCTGTAACTCTACAGAGCAGTCCTATGAGGAGTTCCTCTCCACCTTCACACAGTTGACCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98768 False 227 lncRNA 0.46 2 12947646 12952320
TU98771 True 300 lncRNA 0.46 2 12947646 12952320
TU98772 False 231 lncRNA 0.47 2 12947646 12952320

Neighbor

gene id symbol gene type direction distance location
rag1 rag1,LOC107750737,LOC107670202 coding upstream 4684 12934452 ~ 12942962 (+)
LOC103044030 LOC103044030,LOC108428802,LOC108428756 coding upstream 38585 12897785 ~ 12909061 (+)
man2a2 man2a2,LOC107750719,LOC107720774,LOC107670215 coding upstream 231988 12680106 ~ 12715658 (+)
trnar-ucg_4 NA coding upstream 344222 12603352 ~ 12603424 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 coding upstream 360103 12568837 ~ 12587543 (+)
ehf ehf coding downstream 710489 13662809 ~ 13677076 (+)
pdhx pdhx coding downstream 742108 13694428 ~ 13765050 (+)
cd44 LOC106561308,LOC106573350 coding downstream 842093 13794413 ~ 13828422 (+)
fjx1 NA coding downstream 1056312 14008632 ~ 14011720 (+)
trim44 trim44,LOC107716865 coding downstream 1125692 14078012 ~ 14161299 (+)
G73191 NA non-coding upstream 271298 12674986 ~ 12676348 (+)
G73189 unc45a non-coding upstream 277917 12663967 ~ 12669729 (+)
G73177 NA non-coding upstream 305824 12639245 ~ 12641822 (+)
G73146 fbxo31 non-coding upstream 382854 12564133 ~ 12564792 (+)
G73091 NA non-coding upstream 389794 12557634 ~ 12557852 (+)
G73288 NA non-coding downstream 145421 13097741 ~ 13098590 (+)
G73292 NA non-coding downstream 205449 13157769 ~ 13158679 (+)
G73298 NA non-coding downstream 273351 13225671 ~ 13225955 (+)
G73301 NA non-coding downstream 285640 13237960 ~ 13238212 (+)
G73332 NA non-coding downstream 557436 13509756 ~ 13510238 (+)
LOC103043719 NA other upstream 49715 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 2320682 10272919 ~ 10626964 (+)
G72621 NA other upstream 2865506 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 2977604 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 3798227 9142899 ~ 9149419 (+)
G73533 NA other downstream 1696509 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 1939214 14891534 ~ 14921003 (+)
svip svip other downstream 2619982 15572302 ~ 15577533 (+)
G74169 NA other downstream 3334356 16286676 ~ 16288329 (+)
G74649 NA other downstream 5502531 18454851 ~ 18455197 (+)

Expression


Co-expression Network