hbp1 (hbp1,LOC107732286,LOC107701066)


Basic Information

Item Value
gene id hbp1
gene name hbp1,LOC107732286,LOC107701066
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14709058 ~ 14797283 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99248
ctcagtgttaatcTAAAGGAATAGGACACTATCAAAACTCAAAAGCAATGTttgtatttatgttatttatttatttaattattcagaTAAATAGAAGTAACAGTAACagaggagtgatgtggggagagagcgccatctacccaccccagaggaacatggccaattttgctctctggCTGCTAAAGGCAACACAGCACTGACCTGGAATTTGACCTCATGATTCTGGGCAACTCTGTCAGCGTCTTAGTCTCCTAAGCCACTCTGAGCCAAATGTGAACATTTATAAAACTGTTTCTAAATATATACTGTCCCAATCATGCAAAAAACAGGTATCTTCAAAatccaaaatcaaaatcaacaagaattaaaaaaaaaaaaaaaaaaaagaagtaaaccATTGTTGATAATGTACAGGTTCACGTTCCCATCCAGTTCTTGCACAAAACTATTCTTGTatcatattataaataaaattttaaacttGCTCTCTGG
>XM_007228179.3
tcattggtacatttacacatatttatttttctcatgGATTGTCATTGCTCAGAGTACAAGGAAGTTaaataacaattttaataaatagcatAACGAGTAATAAATAGATCAAATCTAAGAAAATAAGGTATGTAAGTGGCAGTTATAAGTATTTACAGATACAGATCTGAACATGTTTTGGCTTTTTGACAATAATGTGAACAATAGATTTATCCTGAATTATACCTTCTCTTTTATCTGTGCTCATCTGTCTTTTTACTTTCAAATCAAATACTTTTCCATGGATAAATGgagtaatattaaaattattttttttgttttgtttgatttgcTAACTTAAGATaactaacttaaaataaatatatcaaagCTAAGGGTACGACATTGAGATATACGTTATGAACAAAATGTATCATACAATTTATTGTTTACTAATTTTCCTCTGTTTAAAGCCTGTTCAGGTGATATGGCATAGTATGGTGTGGGAAGTGAAGACTCAGTCAGTGCCCCAAAGAGTCCAGAAACCCCAGACAGACTGCTCAGGCATGGACGAAGCCTTTGACTTGCTCAAATGTAATGAGGACCTGCCCTCGTCGCCAGGTTGCCCCTCCAGTGACAGCCACATGGAATATGATGATCTCccagagctgcaggaggtgCAGGATGATCAGTCATCCACAGAGGTGTTCCAGGTAACTCCAGATGTGTCACATGAGGAAAGGCCTGGGCACAGCAGGAACCTGCAGTTAGAGAGCAGCTCCTCACACACCAACTGGCTGACAGAGTTAGCCAATATTGCCACCAGCCCCCAAAGTCCCTTGCTGCAGAATGTGCCTCACACCCGCTCCTCTCCTGTGCACATCTTTGCCGGCAGTAACAGTTTACATTCCTACGCTAGGCCTCCTTTGGCCTCCAGCAGTGCTCCCAGCCCTGCTCGCAGCCACATGAGAGAGCGTCGCCGCGTGCGGGCCAGCAGTGAGTCTGAATCGGGGATATTCTGCATGTCCTCATTGTCAGATGATGACGACATGGGCTGGTCCCATTCTGGGCCTTCCACTGTCTGGCACTGCTTTTTGAAAGGCACACGCCTGCGCTTCCACAAAGGGCAAAATGTGGAGTGGCAGGATGTAGAGGACCTGGCTGAGTCAGAGGATGAGTCTGATGATGAAGGAGGCATGCACTTCAGTCCTATTAAGAGTTATGGATCCGAAGGCTTGAAACTTGTGGCCCTGGAGGAGACTGTGTCTTTTGGTCAGTCTGTTTTGCAACTAACCTTTGACCCTGGCTCTTCAGAGACTGGCCTTCTAACTGCTGAGTGCCAATTGGACCATCCATTCTATGTGAAAAGTAAAGGATGGTCCTCTTTTTATCCGAGCCTTACTGTGGTGCAGCATGGCATCCCCTGTTATGAAATGCAGGTTGGGGATTTGTGTCTGCCGCCGGGACACCGTGATGCCATCAACTGTGATGACTCAACTGTTTTTGACACCTTCAGGAGTTACGACTTTACCCCTCTGGACTCATCTGCTGTGTATGTGCTGAGCAGTATGGCACGTCAGAGAAGAGCCTCACAGTCCAGCGGAGGTACGGTGAGCCCTGACTGTGAGAAACTTGAACGATCTGGCTCCTCCCACCACTCCTCCAGTAGCAAATCACGCAGCCACTCCTCAGGCGGCGGTGGAGCCACACCCACAAAATGCAAGCGGCCAATGAACGCCTTCATGCTCTTTGCCAAGAAGTATAGAGTGGAGTACACGCAGATGTATCCTGGAAAGGACAACAGAGCCATTAGTGTGATTCTGGGCGACAAGTGGAAGAAGATGAAGAACGAGGAGAGGAAGATGTACACAATGGAGGCTAAAGCATTGGCTGAGGAACAGAAGCGCCTCAACCCAGACTGCTGGAAGCGCAAGAGGACTAACTCGGGCTCGCAGCAGAACTAGCCTGAGGAATGCGGGAGACACATGAACTGGACAGAGAGACTGACGCCACCTATCCCGCCTTCTTCTGTAAAAGCGATGAGGCTTAAATGTGATGCTAAACACACTcgctaataataaaataaataaatcaataaatacaaacaggtATACAActtcaagtaaaataaaaaaacaagacaaataagatatataaactatataaaaccaTATAATCTAGTAAACTAACAGTGCTTATATATTtcttatctttttaaaatgtatggaAATGCCTTATTCTTCCAAAGTAAGACAACGCTCAGTTCTTCTTTCAGGTAATTTCATATTTCTAGGCTTGAAAGCTGAGACCCTGTGGTGCTATTTTAGTGAGGGCGAAGGAgcagtatatataaaaaaaacaaaagtctatttttaaatgtaaaaagggGAATTTtagatgttagctagcttgttttcagctgttcatattaattatatttgtatAACTCAATATTGCACAGACTTGATGTATTGCAAATGGACGAAAACTGTTGAATTTCATATTCGTCAGTGATCTGGGAAGGGTTGTATTCTGTAGACACCTATCCAGCCTAGACCATatactgtgtgtgcatgttatGTATGCGAGTGAGTGAgcacatgagtgtgtgtgtgtgttttttgtgagtCAGAGTTTGAGAGAGCGTGCGAGCGTGGATGATTGTGCACCATCCAGCCGGCCATATTACAGTGTATATCAGGCTTCtacataaacatacacatacttacacacacacttgaatACCTACAGACACTCACATAaacatatagacacacacagacacatcctctctcacacacagcacttCAGGGCCATGCCTTCACTgtaagtgtttttgtttttgcactttatatacatacataaccTTATACAACCAGTAAATGTATACAAGCTGAACATTTGTGTATAAAATTCTATATATCTTGCTAAGATATATTCTCATGACACAATCATGGCCAAACTATATTGCTTTGCAGGGTTGCCattacattgaaaaaaaaattttaaagaaaaaaaaaaaaaagaagtaaaccATTGTTGATAATGTACAGGTTCACGTTCCCATCCAGTTCTTGCACAAAACTATTCTTGTatcatattataaataaaattttaaacttGCTCTCTGGTAA
>XM_007228180.3
CGACCAATGAGCGAGCGGATCTAAAAGTAATCAGTCCTGCCTCGGAGAATGCTAGCTAGAGATACTCGGTAATGGCGACAGGCTTGCCTGTTCAGGTGATATGGCATAGTATGGTGTGGGAAGTGAAGACTCAGTCAGTGCCCCAAAGAGTCCAGAAACCCCAGACAGACTGCTCAGGCATGGACGAAGCCTTTGACTTGCTCAAATGTAATGAGGACCTGCCCTCGTCGCCAGGTTGCCCCTCCAGTGACAGCCACATGGAATATGATGATCTCccagagctgcaggaggtgCAGGATGATCAGTCATCCACAGAGGTGTTCCAGGTAACTCCAGATGTGTCACATGAGGAAAGGCCTGGGCACAGCAGGAACCTGCAGTTAGAGAGCAGCTCCTCACACACCAACTGGCTGACAGAGTTAGCCAATATTGCCACCAGCCCCCAAAGTCCCTTGCTGCAGAATGTGCCTCACACCCGCTCCTCTCCTGTGCACATCTTTGCCGGCAGTAACAGTTTACATTCCTACGCTAGGCCTCCTTTGGCCTCCAGCAGTGCTCCCAGCCCTGCTCGCAGCCACATGAGAGAGCGTCGCCGCGTGCGGGCCAGCAGTGAGTCTGAATCGGGGATATTCTGCATGTCCTCATTGTCAGATGATGACGACATGGGCTGGTCCCATTCTGGGCCTTCCACTGTCTGGCACTGCTTTTTGAAAGGCACACGCCTGCGCTTCCACAAAGGGCAAAATGTGGAGTGGCAGGATGTAGAGGACCTGGCTGAGTCAGAGGATGAGTCTGATGATGAAGGAGGCATGCACTTCAGTCCTATTAAGAGTTATGGATCCGAAGGCTTGAAACTTGTGGCCCTGGAGGAGACTGTGTCTTTTGGTCAGTCTGTTTTGCAACTAACCTTTGACCCTGGCTCTTCAGAGACTGGCCTTCTAACTGCTGAGTGCCAATTGGACCATCCATTCTATGTGAAAAGTAAAGGATGGTCCTCTTTTTATCCGAGCCTTACTGTGGTGCAGCATGGCATCCCCTGTTATGAAATGCAGGTTGGGGATTTGTGTCTGCCGCCGGGACACCGTGATGCCATCAACTGTGATGACTCAACTGTTTTTGACACCTTCAGGAGTTACGACTTTACCCCTCTGGACTCATCTGCTGTGTATGTGCTGAGCAGTATGGCACGTCAGAGAAGAGCCTCACAGTCCAGCGGAGGTACGGTGAGCCCTGACTGTGAGAAACTTGAACGATCTGGCTCCTCCCACCACTCCTCCAGTAGCAAATCACGCAGCCACTCCTCAGGCGGCGGTGGAGCCACACCCACAAAATGCAAGCGGCCAATGAACGCCTTCATGCTCTTTGCCAAGAAGTATAGAGTGGAGTACACGCAGATGTATCCTGGAAAGGACAACAGAGCCATTAGTGTGATTCTGGGCGACAAGTGGAAGAAGATGAAGAACGAGGAGAGGAAGATGTACACAATGGAGGCTAAAGCATTGGCTGAGGAACAGAAGCGCCTCAACCCAGACTGCTGGAAGCGCAAGAGGACTAACTCGGGCTCGCAGCAGAACTAGCCTGAGGAATGCGGGAGACACATGAACTGGACAGAGAGACTGACGCCACCTATCCCGCCTTCTTCTGTAAAAGCGATGAGGCTTAAATGTGATGCTAAACACACTcgctaataataaaataaataaatcaataaatacaaacaggtATACAActtcaagtaaaataaaaaaacaagacaaataagatatataaactatataaaaccaTATAATCTAGTAAACTAACAGTGCTTATATATTtcttatctttttaaaatgtatggaAATGCCTTATTCTTCCAAAGTAAGACAACGCTCAGTTCTTCTTTCAGGTAATTTCATATTTCTAGGCTTGAAAGCTGAGACCCTGTGGTGCTATTTTAGTGAGGGCGAAGGAgcagtatatataaaaaaaacaaaagtctatttttaaatgtaaaaagggGAATTTtagatgttagctagcttgttttcagctgttcatattaattatatttgtatAACTCAATATTGCACAGACTTGATGTATTGCAAATGGACGAAAACTGTTGAATTTCATATTCGTCAGTGATCTGGGAAGGGTTGTATTCTGTAGACACCTATCCAGCCTAGACCATatactgtgtgtgcatgttatGTATGCGAGTGAGTGAgcacatgagtgtgtgtgtgtgttttttgtgagtCAGAGTTTGAGAGAGCGTGCGAGCGTGGATGATTGTGCACCATCCAGCCGGCCATATTACAGTGTATATCAGGCTTCtacataaacatacacatacttacacacacacttgaatACCTACAGACACTCACATAaacatatagacacacacagacacatcctctctcacacacagcacttCAGGGCCATGCCTTCACTgtaagtgtttttgtttttgcactttatatacatacataaccTTATACAACCAGTAAATGTATACAAGCTGAACATTTGTGTATAAAATTCTATATATCTTGCTAAGATATATTCTCATGACACAATCATGGCCAAACTATATTGCTTTGCAGGGTTGCCattacattgaaaaaaaaattttaaagaaaaaaaaaaaaaagaagtaaaccATTGTTGATAATGTACAGGTTCACGTTCCCATCCAGTTCTTGCACAAAACTATTCTTGTatcatattataaataaaattttaaacttGCTCTCTGGTAA

Function

symbol description
hbp1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human HBP1 (HMG-box transcription factor 1).

NR:

description
PREDICTED: HMG box-containing protein 1

GO: NA

KEGG:

id description
K21644 HBP1; HMG box transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU99248 False 492 lncRNA 0.35 2 14709061 14797283
XM_007228179.3 True 3113 mRNA 0.42 10 14709058 14715560
XM_007228180.3 False 2747 mRNA 0.45 11 14709058 14717691

Neighbor

gene id symbol gene type direction distance location
LOC111193055 NA coding downstream 18951 14687689 ~ 14690107 (-)
gpr22 gpr22,gpr22b,LOC108428781,LOC107754326,LOC107676451,LOC107561157,LOC107701065 coding downstream 59807 14640001 ~ 14649251 (-)
LOC103028140 golt1bb,LOC107551388,LOC107676462,LOC108428784,LOC107754325,LOC107701063 coding downstream 89670 14614391 ~ 14619388 (-)
LOC103041151 NA coding downstream 130540 14574795 ~ 14578518 (-)
LOC103040849 LOC108428736,LOC104940688,LOC108274568 coding downstream 134837 14566910 ~ 14574221 (-)
mphosph6 mphosph6 coding upstream 25935 14823218 ~ 14826889 (-)
snx20 snx20 coding upstream 30121 14827404 ~ 14831477 (-)
LOC103033621 NA coding upstream 52299 14849582 ~ 14857596 (-)
rbl2 rbl2 coding upstream 71649 14868932 ~ 14889755 (-)
irx3 LOC103035229,LOC108428748 coding upstream 167215 14964498 ~ 14967301 (-)
G73606 NA non-coding downstream 32200 14675881 ~ 14676858 (-)
G73540 slc25a3,LOC107569351,LOC107732290 non-coding downstream 103098 14597951 ~ 14605960 (-)
G73509 NA non-coding downstream 240917 14467622 ~ 14468141 (-)
G73491 NA non-coding downstream 431952 14276679 ~ 14277106 (-)
G73434 NA non-coding downstream 637020 14070499 ~ 14072038 (-)
G73605 NA non-coding upstream 72 14797355 ~ 14800633 (-)
G73639 NA non-coding upstream 6948 14804231 ~ 14805502 (-)
G73642 NA non-coding upstream 21219 14818502 ~ 14818812 (-)
G73643 LOC108428768 non-coding upstream 22193 14819476 ~ 14819763 (-)
G73644 NA non-coding upstream 22947 14820230 ~ 14820476 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 163522 14542196 ~ 14545536 (-)
G73172 NA other downstream 2087702 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 2144080 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2657569 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 3163812 11520887 ~ 11545246 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 326531 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 584046 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 961020 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1669806 16467089 ~ 16470323 (-)
nrg4 NA other upstream 3079743 17877026 ~ 17885395 (-)

Expression


Co-expression Network