G73679 (rpgrip1l)


Basic Information

Item Value
gene id G73679
gene name rpgrip1l
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14909107 ~ 14910680 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99364
CAGCAGAGGGAGAGCATGTGTGCTGTGAGTCAACGCGCGTGAAAATGGGCATTAGCATTTTAAAGAGATGGATTAAATCCCATTAAATTCAGTTAGATTCCATTCCACTTCTTCAATACAAAAACAGCCGTGTGGCACACAGCGGCTAATGAGGCTTAACAGGCTTTTCATTAAGCACAGTTATTAAAGCGCTAAACATCATCACCACATCAAACTGAGCACTAGGGGCTTATACCCAGGGAGGCAGTCACAGAAACATATTCACATCATCTTAAAGCATGACACACAGGGTTCCACTGTAAGGGGAAGAAGCAATGCCTTGTGATGTTATTCATTTGAGAGGGCTTTAGTCACACATGTTGTTAttatttcttcttcattttgaggggaatataaaaaaaaaacaaagactccTTCCTCTAAGTCTTGACTAAACACCTTGAGTGCAGTATTGAGCGCACCAACCAGAAAACCACAAACCCACCTAAATATGCTTAGGTCTGTTGTCGTAATTTTGTAAACGGTTAAGAAAAGAACTGAGAGTTcaaattaaattagattattctATATTCTCCCAACTTTTGAACACAGATACATTTATGTGCTCCACTACTGgttcaaaataaaaactacatGATCAAATGAAGGCTCAACATCTAAACAAAGgttatgtttttaataagtttAAATACTCCTTTACAGCACTCAACAGAGTACATGCCAAAATGCTGAGAGGCTGGAAGTGTTTTGGAAAATCTACTTTTACCCCTTGTTCtgctttttcccattttttttaactgcttataCATTTTTCACCCGCACCCACCACTGTAAACAAACCCTACTTTTTCACCTGACTGTCCTGACTGCAGCTACATGCTGTAAAATGGTCTGTGTGAGTATGGAGCTGCTGGAATGAAGCTTAGGCCAGAGAAGTGTGGTCGTGGTCGGGATCCTCCATGATGGATCGTAGAGCTTCCAGTGCTTCAACAGTCACCTTCAGACTGCCCACCACTTCACTGCTGTCCTGCACATCCACAATGTTGAGGCTAACATCCATCAtgtctctctgcttctctaGAAGGTCAGGGATCCTGAGGTAAGCCACACCCACATCCTCACACTCCTtttcctgctcctcctcctcaggtGGGTCACTAACTACTGTAAACTTGATGTTCTCTAGCTTCCTGTTCCTGCCTTCGAGTACAGCTCTTAGGGTATGGCGCCTGGCCTGGTTGTTCTCCACATCCACATGGATC

Function

symbol description
rpgrip1l Acts upstream of or within embryonic pattern specification. Predicted to be located in cilium. Predicted to be active in photoreceptor connecting cilium. Human ortholog(s) of this gene implicated in several diseases, including Joubert syndrome 7; Meckel syndrome 5; anencephaly; retinitis pigmentosa 3; and vascular dementia. Orthologous to human RPGRIP1L (RPGRIP1 like).

NR:

description
PREDICTED: protein fantom isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99364 True 1262 lncRNA 0.42 3 14909107 14910680

Neighbor

gene id symbol gene type direction distance location
rbl2 rbl2 coding downstream 19352 14868932 ~ 14889755 (-)
LOC103033621 NA coding downstream 51511 14849582 ~ 14857596 (-)
snx20 snx20 coding downstream 77630 14827404 ~ 14831477 (-)
mphosph6 mphosph6 coding downstream 82218 14823218 ~ 14826889 (-)
prkar2b prkar2b,LOC108275286,LOC107732287,LOC107551419,LOC107676465 coding downstream 175854 14718554 ~ 14733253 (-)
irx3 LOC103035229,LOC108428748 coding upstream 53818 14964498 ~ 14967301 (-)
LOC103035545 LOC108428749,LOC105908727 coding upstream 90495 15001175 ~ 15074769 (-)
LOC103038669 kif21a coding upstream 317359 15228039 ~ 15290712 (-)
fibin LOC108442682 coding upstream 520793 15431473 ~ 15434025 (-)
ano3 ano3,LOC107677449 coding upstream 550007 15460687 ~ 15543780 (-)
G73675 NA non-coding downstream 4287 14902388 ~ 14904820 (-)
G73674 NA non-coding downstream 6814 14900668 ~ 14902293 (-)
G73671 NA non-coding downstream 15243 14891472 ~ 14893864 (-)
G73644 NA non-coding downstream 88631 14820230 ~ 14820476 (-)
G73643 LOC108428768 non-coding downstream 89344 14819476 ~ 14819763 (-)
G73694 NA non-coding upstream 170377 15081057 ~ 15081299 (-)
G73697 NA non-coding upstream 174814 15085494 ~ 15085724 (-)
LOC103036159 NA non-coding upstream 175100 15085780 ~ 15111364 (-)
G73760 NA non-coding upstream 277914 15188594 ~ 15189335 (-)
LOC111193098 NA non-coding upstream 403957 15314637 ~ 15318087 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 111824 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 363571 14542196 ~ 14545536 (-)
G73172 NA other downstream 2287751 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 2344129 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2857618 12048626 ~ 12051489 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 213134 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 470649 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 847623 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1556409 16467089 ~ 16470323 (-)
nrg4 NA other upstream 2966346 17877026 ~ 17885395 (-)

Expression


Co-expression Network