G73710


Basic Information

Item Value
gene id G73710
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15123872 ~ 15126987 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99411
CACATCTGAAGTTTATCATAGTCTATGTTTCCATCTCAGGATGATAAAGACCGTGTTGTGATGACCTCATGTCAGTGATCCTCTAGTCAGTGATATGAAATCTTATTCCGTTTACCACAGACTGTTATAGTAAATATACTAGATTTTCATATGATTCTCATAGtagatataaattattataaaatcagTTACATTGATTTAACTTTAGCAAAAACGCTTTGCACATTTTTGTGATGGACAGCCAGCCACTGGGTAGTTTTCTTCAGCTGGATCATGCAacaatatttatacaaaaatatttaaaacatttattataagttaGGTTATGCAGTAGGATGAGTTTGTTCAGTGTGGAACTTTACAGCCTTTGCTGCAACATGCACCCAACAGAAATCCATTTATCCACAAATAAGCAGTTCTCTGTCTAATCTGAATCTGTACAAATAAATCATATCAGAAAGCAAAAAGCTGTTAAAAGAATACTTACTCAACAAACAGTAAAGGCATGACATAAATCCATGACTTAGTGATATATTAAGGCAAAATCcatagtattaaaaataataggattcacaaaaataaaaaggtgcATCACTTTTCAGAACATTGCACATGCAAACATGATGCAGGCAATAATAACAAATATGACTTGATGAGGAAAGGTAAACAGTATCTGTTTGGGACTTTTTCAAAATGTCCCagttacaattatttttacactggactgcaaataaatgcttgttTACCATGGTAAATACTGTAGATTTGTAGTTCAGTAGATTTGTGTTTGCGCTTTGTAGATAAAAGCATATGACGTATGTATGGTTTATGGTTTCTTTCTTATATGAGCTGCTGTGGACGAGTTAACAGGTTTCAACTTATTATCGAAACACCATCAAAACATAGAACAAACAATAATCATTTCTAATGGAAGAAGCACAGCAACCAGGACTGCTACTCTGCATTAAATGAAGATAGGGTTATAAGCAACACACACTACCTCCTTCCTGAGAAGATCTACTACAATGTCTGTTAGCAGAGAGTCAGTGATTGGCCACATTTTCTCCTGTAATAGGCCATAGCTGTGTGAGATCATGAACACTGGTCTAACTAATGTTTCTAATGTAACATTTGATTGACTGATGTGTTTACTAATAGGTGGGCTGTGTCATCATGTTGTACTTCAGCTTTTAACAGCCTAATTCATTCTCTTTCCACCATGACACATACATGAACTTCAAACATGCTGTCCTTTATTGCAACAGCCAGacgatattatatattaaattaatactttcaaaaatatatttaccacAAATATATCCTAAGGTCTAAATACTGAGAATATTCATTACTTAGAGCAGTCACAAAGATGATTGTGGAGATCTGTTATACTGCACTGGCTTAAACatgacaaaagaaagaaaaaaggggggaaaaattCCCATTCCACTATGTTTTAAACATTGATGTATGTTTAATGCATGTTTTATAAGAATAATACAGTATGTGAGCCAGCATGAGTGGGCGTAAGTTTTAAGCTGACATCCTGTCATGTTGAATAAATGAAGTCCTGAGTTCCATGGCTTTGTGTGGGCTTTTTCTGAGCTGGGTTGCTGGGGCAGCTTCCAGCATTCTTTTATcacttttatctgtttttatcatTGAGGGGAAGGTTTAAAATAGCTTTATAGTTTAACATAGCTCAATTCTTATCTGAAATAAGTCTTATTATAATTTGAACTGCctcattttcatttcttttttcttgtcttttaatGTGCAGCTTCCAAACAACatctgatctaaaaaaaaaacatactatcaACGCTTTTTGTCTTATTTCAAGACCACTGATGGTGTCTGTGAAGGCTAAAAATGGCTTATTTGAAGTATGTGGTGCTCATAAGAAATGAGAAACATATAAAAGTGAAACATTAAATGGTTACGCTCCAGTTCTACATCAATGGTGTCTGATCTCATCACTAAGCACATTAATGTCTCATGCCGTTGCTCTCAAGTTCTTGTTTGAAAAATAACCTTATAACACATAAACCTCATAACCACTTCAGTATATTTTACACAGCTCACCTCATAAAAAAGTGCATGCAGTGAAATGCCACCGTAGCTCTAGAGCAGCATTTCAAGGATTCATTAAGGTGgtgctgtatgtgtgtaaaagCTGATATAGgtaggtatgtatgtatgtatatatggcACACATGGAGACTGCAGTGTCTTTAATGACTGGTTCTCACACGCATAGAACTGAAAGCAGCTACAGATTAGTGTATAACCGAGAGTAAGGCTTGTCTTCCCTGCCCCCTGTAAGACTTGAGCAGAATTGCATTGAGGCAGTAGAGTGGAAGAGTCCAGAATATTCAGTAAGATGCACTAAAAGTACAAACTACTCAGCAGCTTCTTAGAAATGTGCTCACTCTGCCTTCACTGCAGAAAGCTGCCACAACCCTCGTTTTGTCTGTGAAACAGCATATAGAGCTTCAATAACTTGAATATGCATGAGGTATAAAATTACTTGCTCGTATAAACCAAGAAAACTGTAAACATTTAGTTCATTGCTCAGCTTTTAGTCTGAAAGAAAAGACTGAAAAGTGGTATGAGACACATGAAGGTGGATCAGACTCAATGGTCCAAAGCATGCAAGAAACTTCCTGATTATTCAGAAAGATTCCACAGCCTCTCCACTAACATCCAACACCTACAAGTCCAATGGAGAGAGCTGCCAGCTACAGACTCCAAGCAGAAGTCAAGGTCAGCTCCCTTAAACCCAGCTACTGTATGACGCAGAGTGTAGAAAGCCTAACGTCTGACTGACCCACTGGACCACGGAATGATcctgagaaagagagtaaaCCACCAGAAGAACAGCTCCCATAGCTGCACTCAGATTTGAGTCTGTAGTGGAAGTGCGGGGTGTGCCAGTGCTGACATGGGTTTAGAGGAGTAAGAAAGAGGAGAGATGTTGGGTTTGATGCCTCTGGTTCTCATGTAGTGCAGGAACTGGTCTGGGATTTCAGCCAAGACGTCCTTGGCCAGACGGGCCATGCTGAGAATGTGGTTCCCCCTGGGGTCAATGTAGTCTCGGAATGGAAcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99411 True 3116 lncRNA 0.38 1 15123872 15126987

Neighbor

gene id symbol gene type direction distance location
irx5 LOC108428750 coding upstream 42849 15075459 ~ 15081023 (+)
hsd17b2 NA coding upstream 300538 14814804 ~ 14823334 (+)
LOC103031298 gpia,gpi,LOC108428767,LOC108274969,LOC107679975 coding upstream 311374 14801718 ~ 14812498 (+)
LOC103031607 LOC108274970,LOC108428766 coding upstream 326639 14788767 ~ 14797233 (+)
amfr amfr,LOC107566269,LOC107679970,LOC107752457,LOC107723982,LOC107659867,LOC107555700 coding upstream 336964 14776711 ~ 14786908 (+)
lrrk2 lrrk2 coding downstream 181542 15308529 ~ 15351344 (+)
LOC111193056 rsph3,LOC107580271 coding downstream 228748 15355735 ~ 15357894 (+)
LOC103041261 clpx,LOC108442679 coding downstream 235781 15362768 ~ 15380544 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding downstream 276855 15403842 ~ 15418547 (+)
slc5a12 slc5a12 coding downstream 309412 15436399 ~ 15449870 (+)
G73598 NA non-coding upstream 279208 14844445 ~ 14844664 (+)
G73566 NA non-coding upstream 447078 14675873 ~ 14676794 (+)
G73532 NA non-coding upstream 476310 14646443 ~ 14647562 (+)
G73527 NA non-coding upstream 485319 14637947 ~ 14638553 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding upstream 504548 14614418 ~ 14619324 (+)
LOC111193097 NA non-coding downstream 59262 15186249 ~ 15187955 (+)
G73715 NA non-coding downstream 61908 15188895 ~ 15189386 (+)
G73799 NA non-coding downstream 238656 15365643 ~ 15368383 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding downstream 255091 15382078 ~ 15383583 (+)
G73800 NA non-coding downstream 257036 15384023 ~ 15384237 (+)
rpgrip1l rpgrip1l other upstream 202869 14891534 ~ 14921003 (+)
G73533 NA other upstream 474321 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2225941 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4496908 10272919 ~ 10626964 (+)
G72621 NA other upstream 5041732 10078579 ~ 10082140 (+)
svip svip other downstream 445315 15572302 ~ 15577533 (+)
G74169 NA other downstream 1159689 16286676 ~ 16288329 (+)
G74649 NA other downstream 3327864 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3343717 18470704 ~ 18479345 (+)
G74832 NA other downstream 3955829 19082816 ~ 19085556 (+)

Expression


Co-expression Network