G73715


Basic Information

Item Value
gene id G73715
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15188895 ~ 15189386 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99416
attgcgggccagatgtatgtttattttgttaacccgtgaggggccgtatgaaaccgcgtgggccggtactttgagacccctggtgtaatgtaaaggtgtaatagtgttgagggaaggtataatattgttaagggaaggtgtaatgttaaaggtgtaatagttttgagggaaggtgtaatagttttgagggaaggtgtaatagtgttgagggaaggtgtaatgttaaaggtgtaatagtgttaagggaaggtataatattgttaagggaaggtgtaatgtaaaggtgtaatagtgttgagggaaggtataatattgttaagggaaggtgtaatgtaaaggtgtaatagttttgagggaaggtgtaatgttaaaggtgtaatagtgttaag
>TU99417
attgcgggccagatgtatgtttattttgttaacccgtgaggggccgtatgaaaccgcgtgggccggtactttgagacccctggtgtaatgtaaaggtgtaatagtgttgagggaaggtataatattgttaagggaaggtgtaatgttaaaggtgtaatagttttgagggaaggtgtaatagtgttgagggaaggtgtaatgttaaaggtgtaatagtgttaagggaaggtataatattgttaagggaaggtgtaatgtaaaggtgtaatagtgttgagggaaggtataatattgttaagggaaggtgtaatgtaaaggtgtaatagttttgagggaaggtgtaatgttaaaggtgtaatagtgttaag
>TU99420
attgcgggccagatgtatgtttattttgttaacccgtgaggggccgtatgaaaccgcgtgggccggtactttgagacccctggtgtaatgtaaaggtgtaatagtgttgagggaaggtataatattgttaagggaaggtgtaatgttaaaggtgtaatagttttgagggaaggtgtaatagtgttgagggaaggtgtaatgttaaaggtgtaatagtgttaagggaaggtataatattgttaagggaaggtgtaatgtaaaggtgtaatagtgttgagggaaggtgtaatgtaaaggtgtaatagttttgagggaaggtgtaatgttaaaggtgtaatagtgttaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99416 True 389 lncRNA 0.39 2 15188895 15189386
TU99417 False 368 lncRNA 0.39 2 15188895 15189386
TU99420 False 347 lncRNA 0.39 3 15188895 15189386

Neighbor

gene id symbol gene type direction distance location
irx5 LOC108428750 coding upstream 107872 15075459 ~ 15081023 (+)
hsd17b2 NA coding upstream 365561 14814804 ~ 14823334 (+)
LOC103031298 gpia,gpi,LOC108428767,LOC108274969,LOC107679975 coding upstream 376397 14801718 ~ 14812498 (+)
LOC103031607 LOC108274970,LOC108428766 coding upstream 391662 14788767 ~ 14797233 (+)
amfr amfr,LOC107566269,LOC107679970,LOC107752457,LOC107723982,LOC107659867,LOC107555700 coding upstream 401987 14776711 ~ 14786908 (+)
lrrk2 lrrk2 coding downstream 119143 15308529 ~ 15351344 (+)
LOC111193056 rsph3,LOC107580271 coding downstream 166349 15355735 ~ 15357894 (+)
LOC103041261 clpx,LOC108442679 coding downstream 173382 15362768 ~ 15380544 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding downstream 214456 15403842 ~ 15418547 (+)
slc5a12 slc5a12 coding downstream 247013 15436399 ~ 15449870 (+)
LOC111193097 NA non-coding upstream 940 15186249 ~ 15187955 (+)
G73710 NA non-coding upstream 61908 15123872 ~ 15126987 (+)
G73598 NA non-coding upstream 344231 14844445 ~ 14844664 (+)
G73566 NA non-coding upstream 512101 14675873 ~ 14676794 (+)
G73532 NA non-coding upstream 541333 14646443 ~ 14647562 (+)
G73799 NA non-coding downstream 176257 15365643 ~ 15368383 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding downstream 192692 15382078 ~ 15383583 (+)
G73800 NA non-coding downstream 194637 15384023 ~ 15384237 (+)
G73801 NA non-coding downstream 195469 15384855 ~ 15385124 (+)
G73817 NA non-coding downstream 239362 15428748 ~ 15429645 (+)
rpgrip1l rpgrip1l other upstream 267892 14891534 ~ 14921003 (+)
G73533 NA other upstream 539344 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2290964 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4561931 10272919 ~ 10626964 (+)
G72621 NA other upstream 5106755 10078579 ~ 10082140 (+)
svip svip other downstream 382916 15572302 ~ 15577533 (+)
G74169 NA other downstream 1097290 16286676 ~ 16288329 (+)
G74649 NA other downstream 3265465 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3281318 18470704 ~ 18479345 (+)
G74832 NA other downstream 3893430 19082816 ~ 19085556 (+)

Expression


Co-expression Network