G73798 (spi1a,LOC108442687,LOC108275191,LOC107555713)


Basic Information

Item Value
gene id G73798
gene name spi1a,LOC108442687,LOC108275191,LOC107555713
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15382078 ~ 15383583 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99525
tcttctcttttttttctccacaatgTTAATAATATGTTGGAGCTTAACTAGGGTGATCATGTACGGCACTGTTTGTGCAGTTTCAGTTTTTAACATATAGGGGGCAGCAGACAACTAGTTTTCTAATCCAGAGGACATTAACCCACTTTCAAATATTCTAGCAAGGTTTTGCCCTCAAGGTCATGATGATCACAAATATCACATATATACACTCATAAGGAAACATGGGCACCCtaggccaaaaaaaaacaaaaactttgtAACAGATTTTTTGTAGCATTAAGCAGTAGGTTGATGCTgcataatatcacaatatttcactaTTTTTGCGATAATAGTTAATAGTTAGTCCAATGTGTATTCTGATGTATGATTTAGaatttttgtaattaattttttCTTCCACCTGCGCAATTTTGGGGGCACAGCAGTAAAGCATGATATCCACCCCCAAGATTCACAGTTTACCGGCAacgttttctttttctgtcatgCAGTCCATTTCTCCTCCAAACAAAGCTTTTCTTTagcataattttaatttttgtgattaggtaaaatttatatttttcttttacttgtaGAATCTTGCTTTTATTAGACAGTGTTTGAGGAATGTTAGTATATTTATAGTTGTAGCTTTGACAAGTCTAAGAATTTATAAATCTTGAATATTTAagtttctaataactttgcaaATCAGTATCTATGAGCCACCATGATTTCTATGTTTTATGTCATGAAAGCCAGACTACAACAGTAACTGTGCTTTAAGCTTTcctaaaaatagttttatttttgctacaaattatgtatttacaacttctcaatttaaaaacaaaatctgtCATGTGGCCAAGGGTGTCTGATGCATTTGATAATTTGTcaacaagtaaaaaaataaaaaatctatactCCAATAAAGTATTTCTCTTCCAGACAGGATAAACTTATATAGTGCTATATAGAGAGTAGAAGCATTGCATAAAAATAGCACTGTCAGGCATTTCTCATAATATTTGTGTGTAAGATTAAGCTTTGCAAATATGAGGGGAAAATCATGAAATTCATACCATGCCTTTATAAAATATCTAGTGTGTCCCCGAGAGTCCCTGAGATGAGCAGTTGAGGAAAGTTAACCTCTGTGTTCTGCTGAAGTTCTGGCATGGAGCAGCCCAGAGCAGTGGTACTCGTCTATCTCTTAGTGATACTTCCTCTCTCCGGACACCCTCCGCAGCACCTCATTGCTGAACTGATAGGTGAGTttcttcttgattttttttacctctccCGTCTTGCCGTAGTTTCGCAGCGCCCTGGCCATCTTCTGATAGGTCATTCTTTTCCTGTTGCCTTTCTGCAGGCCCCAGCGGCTGGCTAGAGCCTCCTTGTGCTTGGAGGAGAATTGAAAGGTGCCTCGCTCTCGGTCAACCCACCAAATACAGTCTTTCATATCCCCATCTCTTAGTAGCTCCAAGAGGAACTGATAAAGACGCATCTTTCTCT

Function

symbol description
spi1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within regulation of myeloid leukocyte differentiation. Predicted to be active in nucleus. Is expressed in anterior lateral plate mesoderm; intermediate cell mass of mesoderm; kidney; rostral blood island; and yolk. Orthologous to human SPI1 (Spi-1 proto-oncogene) and SPIB (Spi-B transcription factor).

NR:

description
PREDICTED: transcription factor PU.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99525 True 1506 lncRNA 0.37 1 15382078 15383583

Neighbor

gene id symbol gene type direction distance location
LOC103041261 clpx,LOC108442679 coding upstream 1534 15362768 ~ 15380544 (+)
LOC111193056 rsph3,LOC107580271 coding upstream 24184 15355735 ~ 15357894 (+)
lrrk2 lrrk2 coding upstream 30734 15308529 ~ 15351344 (+)
irx5 LOC108428750 coding upstream 301055 15075459 ~ 15081023 (+)
hsd17b2 NA coding upstream 558744 14814804 ~ 14823334 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding downstream 20259 15403842 ~ 15418547 (+)
slc5a12 slc5a12 coding downstream 52816 15436399 ~ 15449870 (+)
fancf NA coding downstream 241245 15624828 ~ 15627708 (+)
LOC103044315 ano9,LOC108442698 coding downstream 333482 15717065 ~ 15738062 (+)
sigirr sigirr coding downstream 355979 15739562 ~ 15755106 (+)
G73799 NA non-coding upstream 13695 15365643 ~ 15368383 (+)
G73715 NA non-coding upstream 192692 15188895 ~ 15189386 (+)
LOC111193097 NA non-coding upstream 194123 15186249 ~ 15187955 (+)
G73710 NA non-coding upstream 255091 15123872 ~ 15126987 (+)
G73598 NA non-coding upstream 537414 14844445 ~ 14844664 (+)
G73800 NA non-coding downstream 440 15384023 ~ 15384237 (+)
G73801 NA non-coding downstream 1272 15384855 ~ 15385124 (+)
G73817 NA non-coding downstream 45165 15428748 ~ 15429645 (+)
G73819 NA non-coding downstream 71352 15454935 ~ 15457857 (+)
G73832 NA non-coding downstream 187686 15571269 ~ 15629178 (+)
rpgrip1l rpgrip1l other upstream 461075 14891534 ~ 14921003 (+)
G73533 NA other upstream 732527 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2484147 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4755114 10272919 ~ 10626964 (+)
G72621 NA other upstream 5299938 10078579 ~ 10082140 (+)
svip svip other downstream 188719 15572302 ~ 15577533 (+)
G74169 NA other downstream 903093 16286676 ~ 16288329 (+)
G74649 NA other downstream 3071268 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3087121 18470704 ~ 18479345 (+)
G74832 NA other downstream 3699233 19082816 ~ 19085556 (+)

Expression


Co-expression Network