G73799


Basic Information

Item Value
gene id G73799
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15365643 ~ 15368383 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99526
GGGTTTGGTGTTGGCTGATGTCTAACTGAAGGGATTGTAGATggttgtgtgtttggtgtttgcTGATAGCTAACTGAAGGGATTGTAGATggttgtgtgtttggtgtttgcAGATATCTAACTGAAGGGATTGTAGATggttgtgtgtttggtgttcGCTGATAGCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTGGCTGATATCTAACTGAAGGGATTGT
>TU99527
CATGCAGGTGATGTGTGAAAAAGATGAGCTCTGTTTTATTGtcttgttttcatttttgtgaCGACTCACAGAAGTAGCATAATGTAGCACATCAATGGTTTTAGCCCTGTACCAAGAACACtgtaatgattattttatttttttgtaatgattatttgtttattatttccaAGCCTTACAAGATATTGTTGCTGTCCTCTTTGTGTCCTTTCTGTGTCTGggttgtgtgtttggtgttggcTGATGACTAACTGAAGGGAGggtaaatggttgtgtgtttgGTACTGGTTGATAGTTAACTGAAGGGATTGTAGAtggttgtgtgttttgtgttggcTGATATGTAACTGAAGGGATTGTagatggtggtgtgtgtggtgttggctTATATCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTGGCTGATAGCTAACTGAAGGGATTGTAGATggttgtgtgtttggtgttcGCTGATAGCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTGGCTGATAGTTAACTGAAGGGATTGTAGATGGTTGTGTGTTTGGTACTGGCTGATAGCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTGGTTGATATCTAACTGAAGGGATTGTAGATggttgtgtgtttggtgtttgcTGATATCTAACTGAAGGGATTGTAGGTGGTTGGGGGTTTGGTGTTTGCTGATAGCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTTGCTGATAGCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTTGCTGAT
>TU99528
GGGTTTGGTGTTGGCTGATGTCTAACTGAAGGGATTGTAGATggttgtgtgtttggtgtttgcTGATAGCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTGGCTGATAGCTAACTGAAGGGATTGTAGATggttgtgtgtttggtgttcGCTGATATCTAACTGAAGGGATTGTAAGATGGTTGTgtggtttggtgtttggtgtttgcTGATGGCTAACTGAAGGGATTGTAGATggttgtgtgtttggtgttggcTGATATCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTGGCTGATGGCTAACTGAAGGGACTGTAGATGGTTGTGTTTGGTACTGGCTGATAGTTAACTGTATGGATTGTAGATggttgtgtgtttggtgttggcTGATAGCTAACTGAAAGGATTGTAGATggttgtgtgtttggtgttcGCTGATAGCTAACTGAAGGGATTGTAGATgGTTGTGGGTTTGGTGTTGGCTGATAGTTAACTGAAGGGATTGTAGATGGTTGTGTGTTTGGTACTGGCTGATAGCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTGGTTGATATCTAACTGAAGGGATTGTAGATggttgtgtgtttggtgtttgcTGATATCTAACTGAAGGGATTGTAGGTGGTTGGGGGTTTGGTGTTTGCTGATAGCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTTGCTGATAGCTAACTGAAGGGATTGTAGATGGTTGTGGGTTTGGTGTTTGCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99526 False 230 lncRNA 0.43 3 15366397 15367596
TU99527 True 821 lncRNA 0.41 3 15365643 15368383
TU99528 False 794 lncRNA 0.44 4 15366397 15368383

Neighbor

gene id symbol gene type direction distance location
LOC111193056 rsph3,LOC107580271 coding upstream 7749 15355735 ~ 15357894 (+)
lrrk2 lrrk2 coding upstream 14299 15308529 ~ 15351344 (+)
irx5 LOC108428750 coding upstream 284620 15075459 ~ 15081023 (+)
hsd17b2 NA coding upstream 542309 14814804 ~ 14823334 (+)
LOC103031298 gpia,gpi,LOC108428767,LOC108274969,LOC107679975 coding upstream 553145 14801718 ~ 14812498 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding downstream 35459 15403842 ~ 15418547 (+)
slc5a12 slc5a12 coding downstream 68016 15436399 ~ 15449870 (+)
fancf NA coding downstream 256445 15624828 ~ 15627708 (+)
LOC103044315 ano9,LOC108442698 coding downstream 348682 15717065 ~ 15738062 (+)
sigirr sigirr coding downstream 371179 15739562 ~ 15755106 (+)
G73715 NA non-coding upstream 176257 15188895 ~ 15189386 (+)
LOC111193097 NA non-coding upstream 177688 15186249 ~ 15187955 (+)
G73710 NA non-coding upstream 238656 15123872 ~ 15126987 (+)
G73598 NA non-coding upstream 520979 14844445 ~ 14844664 (+)
G73566 NA non-coding upstream 688849 14675873 ~ 14676794 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding downstream 13695 15382078 ~ 15383583 (+)
G73800 NA non-coding downstream 15640 15384023 ~ 15384237 (+)
G73801 NA non-coding downstream 16472 15384855 ~ 15385124 (+)
G73817 NA non-coding downstream 60365 15428748 ~ 15429645 (+)
G73819 NA non-coding downstream 86552 15454935 ~ 15457857 (+)
rpgrip1l rpgrip1l other upstream 444640 14891534 ~ 14921003 (+)
G73533 NA other upstream 716092 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2467712 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4738679 10272919 ~ 10626964 (+)
G72621 NA other upstream 5283503 10078579 ~ 10082140 (+)
svip svip other downstream 203919 15572302 ~ 15577533 (+)
G74169 NA other downstream 918293 16286676 ~ 16288329 (+)
G74649 NA other downstream 3086468 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3102321 18470704 ~ 18479345 (+)
G74832 NA other downstream 3714433 19082816 ~ 19085556 (+)

Expression


Co-expression Network