G73819


Basic Information

Item Value
gene id G73819
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15454935 ~ 15457857 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99551
tttttttttttgctgtttttgccaATCTGCAGATTTTAGGCACACAGAGAAAGGACTGTTTGAATGAATTGTTGATGTTCAGCAAGGATAGAAAAAGGGTTCAGTTTCTAATGAACCTTACCTCAGAGGACTCGGATTTGGCCAGTCTTGTCCACAGTCTCAGAGTCCACCTCACCAAGAGACCGAGACAAGACCAATTCCAAACAAGGTCGAGACTAATTTTTGGACCGGACTTGAGCACTACAACACTAGCCTACACCCTTGCATATTACATAGGCGATGTAAAATCACATTACCAAAATAGTCTGCAGAGGTGTGTAAAGAAGAGAGCGTGAGAGATGCTGGCGAGAGGTCAGAGGTGGAAGGAGCCGGTTGGTGTCAAGAGCGCTCAGAGGAGTAGAAAACACTGAGCCACAGAGGCTAACTGTGCTAAAGCGAGAGAGATTCAGACAGAGAGCAGGAGAAGGTGAGACATTAGCTGCCAGAGAGACGGggagaactttaaaaaaaaaagaaaaaaaagagaaaacaaaatagagaataaaaaatttaaaatagtaaaaaacaaCAAGTAGTTAAGTTACAAAATAAGgacagaaaaaacaagaaagaaaaaagaaaagattgaaaaaagagaaaaaaaggaattagtaaaaaaaaatagaaataagagagaggcagaaagggaaggatttagggcgtgtcagtgtgtctttataATGACTGAAACGACTGAAAAAGAACACCTGGCACAGCTCACAACGCGCAGGCATGTCTcctaatgaattatttttattaatcataggtgtgctttgggcgtaacatgaaataaactaatcagcacgtcacttgccattccctttaagagccaggtgcccTCTgattttggcggattgctatttcagcgATGCAGCTACCTGAAAGTCTCTATTGCTTCTctgcagagaaaactgacctgctttgAAAGTGAGCAAGTCAATTATGGGAAAACTCCAGGAGTCCATCAAACATCTCCAAGGTGAAGCAGGCTGAATTTCACTCCTGAATTAGCAACACTAACAAAAGTAATATAGGACAAATGTGCTATATTTTgtgttaaagtaaaataatgttattttattttgtattcagttttttgttgatgtacaagtttgcatagctgccaaacGGAACaggccaagatagcaatgaacatctgactgttgactgttgtcaaggttgtattcagtcagtggtgcacctgtgttttccattgccaacaTAGCAAttcgccagaaatgtacctgaacacaccttacttccagactACCACACCCATTAGCaaagatatattcacaagcagcattgctatttaaacagcgcaggtgaaaggtgtgaaaatagactggtggcagggtgtgagatagcaatgagcattgtgacgcgCCTTGCGCAGGATGGAAAATAGGGCCCACATAGAAATAAATTGAGCAgttagagagagataaatataaaaagcgagtcagagacaaaaagagaaataaagaggagatacagagaaaggTAAAGATAAAGAAAAGGAGTCGGAGACAAAGACTTAAATAGTGATAGAGACGttataaagacagagagaaataaaaaaggagaaagtcaaatagagaaagagaagtcAGACAGATACATAGttagagacaaagaaagagagaagaagcaAAACAGAAGTCAGAGAAGAGATACAAACAAAGACTTTTAAGGAAGGAAGATGAAGGAAGGGAGTTTGAAGCAAAGTAAAACAGAGTGACAGAGGAGtcagacagataaataaatgaataaataaatagagagagataaagagacagaaagatgaGGGGTGCTAGAAAGAGTGACGAAGGGGGCGTATATTGAGGTAGAACCCCAAACCCCTCCGCCTGCATAGTAAAAAATACAATTGCACGGGCGTCCTGTTCCCTTTTGACACCGCGGAGAGAGAGAAGCTGGAGAAGGCCGGTCAGGAAAGAGCAGAGGTGGACAGAAGACGGTCAAAGTGCCGGGATCCAAGCCAGAGCGCTCACATTCAGCAAGAAAAACTCAGCAGGTGgccagagggagcagagaggaTGATAGGAGGGCCTCAGGCAGGAGTCACGTGACTCAGGGAGGACCCTTTTTGGTGCAAAGCAGAGCCGCCCACTCTGGAGGGCTGTCCAGTTTCACCATCTGATTCATCAGCAGTGAAATCCAGTAGTGGGCAGCACATAATCCAGTAAAGCTAGCCACCCAAAGCTGCAGGATGGACATGCAaatatgtgtgtaaataatgcaaatgtGCTGCTCTTTTGTGTTTCCTGCATGGTCGTCCACTGAAGGTCCATGTCAGTGTCtttaatgcatgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99551 True 2489 lncRNA 0.42 2 15454935 15457857

Neighbor

gene id symbol gene type direction distance location
slc5a12 slc5a12 coding upstream 5065 15436399 ~ 15449870 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding upstream 36388 15403842 ~ 15418547 (+)
LOC103041261 clpx,LOC108442679 coding upstream 74391 15362768 ~ 15380544 (+)
LOC111193056 rsph3,LOC107580271 coding upstream 97041 15355735 ~ 15357894 (+)
lrrk2 lrrk2 coding upstream 103591 15308529 ~ 15351344 (+)
fancf NA coding downstream 166971 15624828 ~ 15627708 (+)
LOC103044315 ano9,LOC108442698 coding downstream 259208 15717065 ~ 15738062 (+)
sigirr sigirr coding downstream 281705 15739562 ~ 15755106 (+)
LOC103046771 LOC103046771,LOC108442701 coding downstream 328096 15785953 ~ 15798451 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding downstream 352552 15810409 ~ 15814622 (+)
G73817 NA non-coding upstream 25290 15428748 ~ 15429645 (+)
G73801 NA non-coding upstream 69811 15384855 ~ 15385124 (+)
G73800 NA non-coding upstream 70698 15384023 ~ 15384237 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding upstream 71352 15382078 ~ 15383583 (+)
G73799 NA non-coding upstream 86552 15365643 ~ 15368383 (+)
G73832 NA non-coding downstream 113412 15571269 ~ 15629178 (+)
G73891 NA non-coding downstream 208491 15666348 ~ 15669769 (+)
G73941 pkp3,LOC107589311 non-coding downstream 306683 15764540 ~ 15765125 (+)
G73970 NA non-coding downstream 437862 15895719 ~ 15896522 (+)
G73975 NA non-coding downstream 535312 15993169 ~ 15993836 (+)
rpgrip1l rpgrip1l other upstream 533932 14891534 ~ 14921003 (+)
G73533 NA other upstream 805384 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2557004 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4827971 10272919 ~ 10626964 (+)
G72621 NA other upstream 5372795 10078579 ~ 10082140 (+)
svip svip other downstream 114445 15572302 ~ 15577533 (+)
G74169 NA other downstream 828819 16286676 ~ 16288329 (+)
G74649 NA other downstream 2996994 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3012847 18470704 ~ 18479345 (+)
G74832 NA other downstream 3624959 19082816 ~ 19085556 (+)

Expression


Co-expression Network