G73877 (svip)


Basic Information

Item Value
gene id G73877
gene name svip
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15572334 ~ 15577498 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99622
AAAGTATTAAAGTGGCACAGCATCTTGTTTTTAATTGAAGAGTAAGGACCTCTCTAAGTATTGACAACGGCAGCATGGTTTGGAATTGAGGGGTAAAAAGTCCCACAAGCCATATTTTTGTTGAATACACGTGAAAAAGCAATCTTGTGAAGAAtaccatttaacattaatagAACAGCTCCATCTCAGCTGCAGTCTTGCTGTGTTGTAGTACACAAGTCTTTGCACTTAGACCTAGAGCACAGCTCGCCTAACTAAGAAGCAGGTCTCATATCTTCCAAAATGAGTTGAACAAAATCATAAAATGCTGAAAATCCATGTGCTGTattcaacagaaaaaaaacctttaaagtAATCAAGTATAACCATCATCACTTCATTTACTGTCACACAAAGTGTTTGCTATAATTTCAGACTGACCAGTTTAAACCATCAAAATCCTCTATCCACACTGTCACCTTCACTCTGTTAAATTAGAAATCACACTTTCACATGCtgtacaaaacaaacacaaccaATAACTTATATTGCACTGCCATGCTTCAACCAAACCACTGCAGAAGAAAACTGAACGCCAACGTATCTGAATGTGCCGAACAAACAgtagaaaaatgtattacaaaacGTGTTTTTTTAGGTGATataaacatatttcaaaatTACATTCATCTGGAAccattgcttaaaaaactgGTAAGCTGAAGTCAAGCATGAGAAAATTCTATATGTAAAGAAAGCACTGTGGTGCGTGAGCTTCTGAGCTGGAGAAAACTGTTGTAGTGACTGAATGCTCTCTCAGTAgtcataatatataaataaacattgaGTGTATTAAAACCCAAGCATTACTGCCCTTAGTTCTCACACATAATCCATTGGCTGGCACATGTTGGCGTGTTAGAGAAGAAGGCATGTCTTGCAAAGAGCTCTGGCCAACAAGGAGACCTGAAATGATGTACCTTGCAGAAAGCTTGGCAAAACAATTCTAGATGCTACACTCTCAGTCTTATCTAGCTTGCTTTATAAGAAAgtatttaaaaagagaaaaaaaaaagccttcttGTTTTGATGGATTTGCTGCTCAGGCAGTCGGACTCAAAGCTGACACACACTAGATGTCTTCTCTTCACCTTTTGTTAGCCAACCTGCCACTTAAGCCCCCCACCTCCTGAGGGGGATGTGCTCATCGCCTGTTTTTCCatctcctcctgttttttctttttcctttccaCGGCTTCTGGGTTTTTAATGCCTCTGTATGTGCTctctttctgtcttttttctgcAGCTTCTGCCAACTGATGTCTTCTGGTTTCAGGATCCGGCGTTACCACAACGTCGTCTGCTGCTCCACCCAGACAGGGCAAGCACATCCCCATACTTGGTATTCCGATAATATCCCACAgtttccagcagcagcagcggatcAGACAGTCAGACAAGTTTTAACAGCCACCAAAGTTAATGACAGCGCTCAGCTAAGTAACAGGGGCGGCTACCAGCTACAGTATTGTGCCACAGTATGTAAAGCAAATCCAGAAGAGCAGTAAAGCGGGGTGGGGAgggactgctgctgctgctgctacagctACAGGATTAGCCAGAAATGTAAACAGCAGCTCCAACTAACCCTAACTGACTACACCTAATACCCCACACTAAATAACACACTGTCCACCTACACCAACACTACATTTAAACCATCAGCACACCTCTTCTGAACACGGCCCGGCATCTGAACTGTACTCCAGTCGCAGTTACTGAAGCTGAACTTAGATAACAGCGTTTGTTTATGAGGTGAACCGTCGACACTTGTTAGACAGCT

Function

symbol description
svip Enables ATPase binding activity and protein self-association. Involved in several processes, including negative regulation of retrograde protein transport, ER to cytosol; positive regulation of protein lipidation; and regulation of cellular catabolic process. Located in endoplasmic reticulum membrane. Is anchored component of membrane.

NR:

description
PREDICTED: small VCP/p97-interacting protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99622 True 1825 lncRNA 0.42 4 15572334 15577498

Neighbor

gene id symbol gene type direction distance location
LOC103042382 LOC108442690 coding downstream 794 15563971 ~ 15571540 (-)
ano3 ano3,LOC107677449 coding downstream 28554 15460687 ~ 15543780 (-)
fibin LOC108442682 coding downstream 138309 15431473 ~ 15434025 (-)
LOC103038669 kif21a coding downstream 281622 15228039 ~ 15290712 (-)
LOC103035545 LOC108428749,LOC105908727 coding downstream 497565 15001175 ~ 15074769 (-)
gas2 gas2,LOC107677431,LOC107728426 coding upstream 3538 15581036 ~ 15621857 (-)
LOC111193057 NA coding upstream 44483 15621981 ~ 15624917 (-)
slc17a6 slc17a6,slc17a6a,LOC107555703,LOC107570095,LOC107677426 coding upstream 67581 15645079 ~ 15660833 (-)
LOC103041761 NA coding upstream 84504 15662002 ~ 15663287 (-)
ano5 ano5 coding upstream 88851 15666349 ~ 15710606 (-)
G73870 NA non-coding downstream 43872 15448674 ~ 15528462 (-)
G73869 NA non-coding downstream 117724 15449504 ~ 15454610 (-)
G73862 NA non-coding downstream 141027 15430147 ~ 15431307 (-)
LOC111193098 NA non-coding downstream 254247 15314637 ~ 15318087 (-)
G73760 NA non-coding downstream 382999 15188594 ~ 15189335 (-)
G73910 NA non-coding upstream 66323 15643821 ~ 15644252 (-)
LOC111193099 NA non-coding upstream 275804 15853302 ~ 15953813 (-)
G74091 usp3,LOC107659494 non-coding upstream 526118 16103616 ~ 16108725 (-)
G74199 NA non-coding upstream 625026 16202524 ~ 16215525 (-)
G74202 LOC108433646 non-coding upstream 641598 16219096 ~ 16222273 (-)
LOC103040324 NA other downstream 157721 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 358050 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 775051 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1026798 14542196 ~ 14545536 (-)
G73172 NA other downstream 2950978 12610834 ~ 12621356 (-)
LOC103046265 pkp3 other upstream 180805 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 889591 16467089 ~ 16470323 (-)
nrg4 NA other upstream 2299528 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 2405249 17982747 ~ 18029747 (-)
G74791 NA other upstream 3361676 18939174 ~ 18940464 (-)

Expression


Co-expression Network