G73891


Basic Information

Item Value
gene id G73891
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15666348 ~ 15669769 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99639
AAtagatttttcatttatttaaaattatattcatttATGATTTCAGATCCAATGATAACTTAGTAACTTGGCAACTTGCTACAGCATTACAAAATCAATAATggtgttttaaaacagagatgatCAGTAACAAAAGACAAATGATTTTGGCGCAAAGGTTGTTGATTGTCTATACAGATAAAGTCCAATCTGGAATTACAGTATCTATGTAAAGGGCCAAAACAGCAGAACATACCAGCATACAGGCAGAAGTGCACAATGAAACACAACCATGATTTTTTGCATTTCACCTCTAACAAATGCATAGAAATCTTAGTATATATGATCTGTAGCATTTTAGGCATTTTGAGAAATGTGcatagaaaattagaaaaaaaaaaacaaaaaaaaacaaatggcaaACATAAACAAGATTTTTTCATGATTTATCCTATCATTTTATGTCATAATTCCTAAACAAACTGAACAATCTGAACAAAAAGTCTTTAGAATTCAAGtcacaaatataaacaaaaccagAGTGTGGCATTTACTGTAAACATTGAAAACCAATTACTTATCTAGATAAACTTGAGTGGCTTTATTTGTGTTGTGATACCAGTGTTGTTTACATATGTTCTGTAGGACATTTGACAGACATACACAGGGAGAGAGGGTGGAACACTTACATGCATGTAAAGGGGAACAAATTAACAATGATTTGCTTCAGGATAAAAGGAACTTAAGCACAGCATATgtttctgtatgtatgtatgtatgcatgggCCCAAATGCTACCCAATGCTAAAATTACATCCATTTTACTGTACTGTGATGCTTTACAAAGTTTTACATCAACTAATCTCTTCTATCCACAGCAGACCTGGACGGTTGGCCTGCCGTCTTGATTTCAGGCATTTCATTAAAACACTGATACTGTAGTGTAAATACATTAATCACACTGACAAACCCCTTCTTCATTAAGTGCTTTGTGCAAGACAACAACATTACACAATCTCATTTATGTCCCCTGACCtgtaaaaagaacagaaaatgaaaagaaaaaacaaacgaaCAAAAGAGACACTCACAGAGTTCCCATGACTACAGCTGGACTTTACTCCTCTGTAATAAATGTGAAGATAAATAAAGGCACATTAAAAGCCATTAGTGTGCCTAGACTCCTCTTTCAGTCCTGCATTAAACGCTATTTACTCTTTACACTCTTTACACTTTGGCTTTAAACAGTAAGTTTTGGCTGGATTTGGTTCACAGGGTTCGAGGTGCTGATTGCTTGCAACCACCATCGGCTGAGGTGTCTGTTCTTTAAATAAGAGTGTGAATGCACTAGTGACATCACCTGGTGGCAGACAGAATGTACTTGAGAAATGTGGTGCACTTGCTCTTATTTTGCATAGAGGTACGGTATATTTCACAGGAATAAAAGAAAAGCTCCTTGCAACAACCTTGTGCAGCTGCATGCTATGAAAAGGGCACTTTGTAGTGATGAGTGAACTGTGCACTGTACAGTGTCCTGATTGTGAAAAtactgttttacattttactgatAGTTAATCAAGAGCTTATAGAGGTATTTAAGTTAAACTGTCTatgattttaaatgcatttaaaatctatttatgtaaaatgtcttcatacagaaataaatataaactgaaGTTTCCCCTGAACTTCTTATCTGAAAGGTTGAACTTCACTGAAATGAACAGGCATCTGTGCTGATATAACGACTCACATTTTTGCCTTGAAGAGAGTAATACAAGCTATAGATATATAGAAATAAGGCATCTTGTCTTTGGCTGCATAATGGGTTTGataaaaataatcttaaatcTGAATAAGAGATAATAAAcaacacataataaaaaaaagaaataaaaaagtttctAAACCACAgttcaataataaaagaagCCACATTTGGCCTTTTGCATCAGACGTCTCAAAGTAAAAGAGCTAAAGTACTTTTACCTTCATGTCTAAATGAGTATGTGTTTGGGCGGAAAGGAGCAGATCCAAGATCAGTATTTTCACTCTGCTTATGAGTAGAATGGCAAGAACAGTCAGTGTCTGGGGTTTGAGGTCAGGGAAGTGCCTGATAGGAGCCGCTTTCATTTTCAcataagaacagaaagctgagatTAGGTCAGGCATTCAGATACAACCTCATGTTTTAAAGGCTGAGCTACTGTTGGACAGATGCACTCTCCTCCTCCCATCTCATTCAGCTGCTTTTTCAGCTTGTCCACTTCATAGTTGTGCAAGTACTCCTGCACCAGGTATCGCTCACGCTTTACACGAGCCTGCACGTCTGACGGTACATCTGGGATCAGCCATGCCACTAAGAACTTCACTACAAACACCACGTGCTGAAAAAGAACAGACATATTAATACATCAGTGATGAAGTTAAGGAAGAGATATAAGGAAAAGAACAcggtttaaccctttaatacTTGAATGATAATAACAACACAGCTTCTCAATGTAAACTGCAGATGGTCTGTTTCATCTACGGCTGTCAATCACTTAACCCGTAGGTGTAACCCGTCTTCTGTTTTAAAACAGGGGGGAAAATGTGCCAATATTAGCACAGGGAAAACTAACTGTAATAATGAGACACTGCAGATGGAAATACAGTGTAAAGGACAAAAAAATAGATAGTAAATTAGCTGGTTTGTAACTGAAACCTATGGGGAATATACTGCAAACAGCCAGCAGAAGTGCTAGACCAGTGGAGGCTTCCGAATTTTGAGAGATGCTGCACTGTCTATTTGtctacagtcattggtttgaaCTAACAAACTAGCAATACCATTTATATACTAGTTATTATTACTctgataaaacaataatatgccCTTAAATACCCAAATTTAAATGTGTACAGCACATGCTGACAGCATTATCTAAATATTGCTGGTCAAATGTAAAGTAAGATTGGGTTAAAGACTCATTGTCTGAAGAATGAAAACAACGATGGCCCACCTccataatgataataaatgcCATTTTGGCAGCCAGGATGTGCCAGAACTGCATGGTGTGAGAGTACTCATACTCATGGCCAGGAGGATAGCGGTAATCACGGTACCTaagcacacaaacCTGCAGGTTGTAATTACAGAATTGTTAAACCAGGCAGGATTTTCACCAGGATCAGGTGTATTATCGCTGTGCAGCTGTGAGATGTTGAAGATGGATAGGCTGTTGTTGACGTAGCCCTGCATGGTGAGCTCAGTTCCAGGGTGATATGCGTATAGATACACAAGCCGAGGAATCATATCTGAGGTAAACGCCACGATGAAAGCCTGATcaagagagaaacaaacaaatctgAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99639 True 3340 lncRNA 0.37 2 15666348 15669769

Neighbor

gene id symbol gene type direction distance location
fancf NA coding upstream 38640 15624828 ~ 15627708 (+)
slc5a12 slc5a12 coding upstream 216478 15436399 ~ 15449870 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding upstream 247801 15403842 ~ 15418547 (+)
LOC103041261 clpx,LOC108442679 coding upstream 285804 15362768 ~ 15380544 (+)
LOC111193056 rsph3,LOC107580271 coding upstream 308454 15355735 ~ 15357894 (+)
LOC103044315 ano9,LOC108442698 coding downstream 47296 15717065 ~ 15738062 (+)
sigirr sigirr coding downstream 69793 15739562 ~ 15755106 (+)
LOC103046771 LOC103046771,LOC108442701 coding downstream 116184 15785953 ~ 15798451 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding downstream 140640 15810409 ~ 15814622 (+)
stoml1 stoml1 coding downstream 151624 15821393 ~ 15828549 (+)
G73832 NA non-coding upstream 37170 15571269 ~ 15629178 (+)
G73819 NA non-coding upstream 208491 15454935 ~ 15457857 (+)
G73817 NA non-coding upstream 236703 15428748 ~ 15429645 (+)
G73801 NA non-coding upstream 281224 15384855 ~ 15385124 (+)
G73800 NA non-coding upstream 282111 15384023 ~ 15384237 (+)
G73941 pkp3,LOC107589311 non-coding downstream 94771 15764540 ~ 15765125 (+)
G73970 NA non-coding downstream 225950 15895719 ~ 15896522 (+)
G73975 NA non-coding downstream 323400 15993169 ~ 15993836 (+)
G73990 man2c1,LOC107752311 non-coding downstream 380940 16050709 ~ 16051543 (+)
LOC103025699 NA non-coding downstream 464715 16134484 ~ 16147862 (+)
svip svip other upstream 88815 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 745345 14891534 ~ 14921003 (+)
G73533 NA other upstream 1016797 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2768417 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5039384 10272919 ~ 10626964 (+)
G74169 NA other downstream 616907 16286676 ~ 16288329 (+)
G74649 NA other downstream 2785082 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2800935 18470704 ~ 18479345 (+)
G74832 NA other downstream 3413047 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3470380 19140149 ~ 19322775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G211807 NA non-coding NC_048566.1 CM023220.2 100465305 ~ 100465644 (+)