G73941 (pkp3,LOC107589311)


Basic Information

Item Value
gene id G73941
gene name pkp3,LOC107589311
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15764540 ~ 15765125 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99698
CTATGACACATGTCTGCATAGCAAACGCCCCCACAAGACACAATAAAGATAGGGAAGTGAACTTACCCGTTTGTCCCCAGCTGTAATGTTCtgcagggctccggcagctgccTCTCGGGTGATGGTGTTCACTTCACACCGCTGCAGGACTTTGTTATACAGCTCTACCACCTTCGGATGCCACAGCCACTCAATGCCCTTTGGTACTCGAGCCACCTCCGTAAACGTTGTCAGGTCCTTATCTTGTCTGTCTTTTGCTTTCTTGCTCTGAGGAGTGAAGCAGCCGATAGCCTCTCCTTTGGATGAAGCCTGGGCTCGTGTGGGACCCTCCAAACGCATGAGTGCTGAGGGGGGAATCTCGCTGTACAGCTGATAAGACAGGTTtcgcaatacacacacacaattctccACTCCCTGCCacaggaacagagagagaaagagacgatTAATGTTTATTCATTCATACAGTGAATATCCT

Function

symbol description
pkp3 Enables alpha-catenin binding activity; cell adhesion molecule binding activity; and enzyme binding activity. Involved in desmosome assembly; negative regulation of mRNA catabolic process; and protein localization to plasma membrane. Located in cell junction; nucleoplasm; and plasma membrane. Part of messenger ribonucleoprotein complex.

NR:

description
PREDICTED: plakophilin-3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99698 True 478 lncRNA 0.50 2 15764540 15765125

Neighbor

gene id symbol gene type direction distance location
sigirr sigirr coding upstream 9434 15739562 ~ 15755106 (+)
LOC103044315 ano9,LOC108442698 coding upstream 26478 15717065 ~ 15738062 (+)
fancf NA coding upstream 136832 15624828 ~ 15627708 (+)
slc5a12 slc5a12 coding upstream 314670 15436399 ~ 15449870 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding upstream 345993 15403842 ~ 15418547 (+)
LOC103046771 LOC103046771,LOC108442701 coding downstream 20828 15785953 ~ 15798451 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding downstream 45284 15810409 ~ 15814622 (+)
stoml1 stoml1 coding downstream 56268 15821393 ~ 15828549 (+)
LOC103021835 cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280 coding downstream 66332 15831457 ~ 15839847 (+)
stra6 stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458 coding downstream 186812 15951937 ~ 15979103 (+)
G73891 NA non-coding upstream 94771 15666348 ~ 15669769 (+)
G73832 NA non-coding upstream 135362 15571269 ~ 15629178 (+)
G73819 NA non-coding upstream 306683 15454935 ~ 15457857 (+)
G73817 NA non-coding upstream 334895 15428748 ~ 15429645 (+)
G73801 NA non-coding upstream 379416 15384855 ~ 15385124 (+)
G73970 NA non-coding downstream 130594 15895719 ~ 15896522 (+)
G73975 NA non-coding downstream 228044 15993169 ~ 15993836 (+)
G73990 man2c1,LOC107752311 non-coding downstream 285584 16050709 ~ 16051543 (+)
LOC103025699 NA non-coding downstream 369359 16134484 ~ 16147862 (+)
G74168 NA non-coding downstream 521133 16286258 ~ 16291939 (+)
svip svip other upstream 187007 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 843537 14891534 ~ 14921003 (+)
G73533 NA other upstream 1114989 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2866609 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5137576 10272919 ~ 10626964 (+)
G74169 NA other downstream 521551 16286676 ~ 16288329 (+)
G74649 NA other downstream 2689726 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2705579 18470704 ~ 18479345 (+)
G74832 NA other downstream 3317691 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3375024 19140149 ~ 19322775 (+)

Expression


Co-expression Network