LOC111193099


Basic Information

Item Value
gene id LOC111193099
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15853302 ~ 15953813 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99834
GGGCAATAGATAGCTAGTTGGTAGGGGTTTTAATTACCCCAGAACTCCCAAAGAAAAGCCTCGTTCAGAGGCGTGATGTAGTTAAATACATCCAGTTAGCAACATGCTAATACGACCTGTCCATCCgaactacattttaaaatatttttggaatATAATACGCCGTTTGAGCACCATTTGGGGCATTATTTGGCGTTTTAGATACTTTAGATACACTGAAATCTGGAGTTTCACCTGAACGCGACTCACCTTCAgcatggtggaggaggaggcgtgtgagtgagtgagtgagtttggCAGTGTTTTTCAGCGTTTAAAGGCTTTTATTGACGATCTTGGTTATGAACCTGAAGaatgaaaaaaagggaaaaaaagaatgaaagtgCAGTGGGAGCTAGTAGCATATCTTGGCTGAAGTTCAAAGAAATGGCCTTTGATCAAAGCCCATTGTAAATGCACACCCACGTCGTGGATCTGAAATCAGCTCCTCCAGTGAGACCCACCCCTCCTTTCCAATTAGTGCAACCCCCACAGAGCACCTCAGAGGAAAGACAGAACCTCCGTTAAATGGCCTGAACCTGCTAACCCATGATGATAACCCATCACAAAGCCCTGAGCCCCTCCTGTATACCCATGTGTTGGAGTCTCCTCTGAGGAGGGCAggctcctccttctctctcttacccACACTTATGCTCATGTGTCTCGCCCTGGAGATGGAATCGCATCGCAGCATCACTCTGCATGGAACCCCCTGCCTGCCCCCGCTGAGGGATAGAGGCACTCCACTGCCATTTGCTATAGTgagcagtaaag
>XR_002650249.1
tgaaagtgCAGTGGGAGCTAGTAGCATATCTTGGCTGAAGTTCAAAGAAATGGCCTTTGATCAAAGCCCATTGTAAATGCACACCCACGTCGTGGATCTGAAATCAGCTCCTCCAGTGAGACCCACCCCTCCTTTCCAATTAGTGCAACCCCCACAGAGCACCTCAGAGGAAAGACAGAACCTCCGTTAAATGGCCTGAACCTGCTAACCCATGATGATAACCCATCACAAAGCCCTGAGCCCCTCCTGTATACCCATGTGTTGGAGTCTCCTCTGAGGAGGGCAggctcctccttctctctcttacccACACTTATGCTCATGTGTCTCGCCCTGGAGATGGAATCGCATCGCAGCATCACTCTGCATGGAACCCCCTGCCTGCCCCCGCTGAGGGATAGAGGCACTCCACTGCCATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99834 True 816 lncRNA 0.47 5 15853302 15953813
XR_002650249.1 False 421 lncRNA 0.53 3 15927484 15952104

Neighbor

gene id symbol gene type direction distance location
ano5 ano5 coding downstream 142696 15666349 ~ 15710606 (-)
LOC103041761 NA coding downstream 190015 15662002 ~ 15663287 (-)
slc17a6 slc17a6,slc17a6a,LOC107555703,LOC107570095,LOC107677426 coding downstream 192469 15645079 ~ 15660833 (-)
LOC111193057 NA coding downstream 228385 15621981 ~ 15624917 (-)
gas2 gas2,LOC107677431,LOC107728426 coding downstream 231445 15581036 ~ 15621857 (-)
islr2 islr2,LOC107662462 coding upstream 26168 15979981 ~ 15984118 (-)
sema7a NA coding upstream 60552 16014365 ~ 16026901 (-)
man2c1 man2c1,LOC107682572 coding upstream 86252 16040065 ~ 16051577 (-)
ca12 ca12 coding upstream 101243 16055056 ~ 16085634 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding upstream 303525 16257338 ~ 16313325 (-)
G73910 NA non-coding downstream 209050 15643821 ~ 15644252 (-)
G73877 svip non-coding downstream 275804 15572334 ~ 15577498 (-)
G73870 NA non-coding downstream 324840 15448674 ~ 15528462 (-)
G73869 NA non-coding downstream 398692 15449504 ~ 15454610 (-)
G73862 NA non-coding downstream 421995 15430147 ~ 15431307 (-)
G74091 usp3,LOC107659494 non-coding upstream 149803 16103616 ~ 16108725 (-)
G74199 NA non-coding upstream 248711 16202524 ~ 16215525 (-)
G74202 LOC108433646 non-coding upstream 265283 16219096 ~ 16222273 (-)
G74203 NA non-coding upstream 298679 16252492 ~ 16252752 (-)
G74205 NA non-coding upstream 332415 16286228 ~ 16292019 (-)
LOC103046265 pkp3 other downstream 72624 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 438689 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 639018 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1056019 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1307766 14542196 ~ 14545536 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 513276 16467089 ~ 16470323 (-)
nrg4 NA other upstream 1923213 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 2028934 17982747 ~ 18029747 (-)
G74791 NA other upstream 2985361 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 3038855 18992668 ~ 19008366 (-)

Expression


Co-expression Network