G74091 (usp3,LOC107659494)


Basic Information

Item Value
gene id G74091
gene name usp3,LOC107659494
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16103616 ~ 16108725 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU99883
CCATTAACTGGCATTTCTTTACTTCCTCTGTAAGTGACAGCATGAAATGATGAGCTCTCATGACATTATGGTAGCATCTGGTTTAAAACAATGGGCTAAATTTAGTCtcattaaaacagtataaataaacaaaacatgtcTAAGCATGGATAACATTTCATAGGCTTGTTGTGCCTtattttaaaagtcattttCACATTTATGAGGTGGTGGTGTGTAAGAGTAAACTACATGTGTTCCATTAAAAAAcgagaaaaataacaaaacacgAAAAAGCTAATTGGAATCTATTTCAAGTTTTTGAATACCAACAAACAGCAGGAATATACATATGGGAAACATAATCAAAAAAGCTAAACAAATACTTATATTTTCTTTCTGTGCAAACATATTCACCTGGTTAATTTGTCAGGAGTCCAGTGCTTGACAGAGAGACTTGATTGGTGTATTAGTTAGGAGAGTCCAAAgctgtaaaaatataatttcattttttttttctttttttccagcatttaaaaaaagtccTTGGCTCTGTCAATCTACATGACCCACTTTCAACAAGAAGAAAGCATTCTCCATAAATACAACAATTACCTTTGGACTCTGAACAAACGCAACAGGAATGTTTCTTTAAAAGATAAGAATCAACACAGCAGCAATTTGATTTTACTGAGGTTTCTTCTGTTGTTGGTATGGGTGAAATGACGACTGAAGCTGAGTGAGAAACAGTGTGCGCAAGTGGTGGGCTATCATTCTGAAGGCTTCTTGGTATCAGTAAGGCTGATTAAAGCTTAGGCTCGGTCTCTGAGGGTGTACTGTCCTGCTTTGCCTGCTCTGTGTAGAAGAGAATATAGGCCTTCGCTTTGGTCACAGTCTCCTCACTGACCAGAGTCACAGTGCTGTCATTGAAGTGATACCAGCGGCCTTCGTGGAGGCCATATGCTGTGTAATGACCTGATCCCACACCAGATCCATGATGCACCACTACTGCAGCAAGGTTATACAGGCCGCTCTCAGGCAGACTGTTTTCAGGCTCCAATAAAAATCGCTTCATATCAAGGCCTCGCAATGGGAACTCCACATAGGTATCAACCTTATTCCTTAAAAAGGCTGTCCAGTGAAACCTTTTGAGGTGTAAACACAGcacCTTGGGCAGCTTCTGAACCCAGAATTTCTTGGTGGACTTTTGTCTCTTTTTACACTTATGGCACATGTAGAGCTCCGTTTCATCAAGCTCCTCCAGGTCAGTGAAACTTAAAAGGCAGTGGTACAAGTTGCAGGTTGGCCCCGGCTCTTGGTCCTTAGTCCGTTTTACTCGAAACTGGCTGGGAATGTCCAATGACAGATCTAAAAATGGGTCAAACTTCCTTGACTCTGTGCCACATATCAAACAGTTGACTTCATTCTGCAGCACACCACTGAACACTGAGGTGACCACTGTGGGGGTCCCATTGATACAGCATTTGCCTTCTGAGGTAGGGTTTGGCCTGTCAGAAAGCAAACTGGGACCAGGTAGTCCATTCTTACTGCCCTGCATCTCTCTGTGGAGGTGGTCCAGCAGGTAACGCAAAAACTCATGAGCGTCCTGTTGCTGGTATCCCCTGAAACTTGGCATTATTTTCCAGATGACATAGAACAGAGCATCTGGGCTAAAGGCAGTCTGGTTCCCTTGCCAAAGGGAACAGAGGGTTTTCCTGAGCTCTTCTACCAGGGACCTGTCAatacacaaagaaaaaagaaaataataataaataaaaaaacagaaaagtttGCTTAAACATATTTccacatatataaataacatattgtcattaattatttatacCCAAAAGGCATATTCTCAAGTAAATGGGACTTGTTCAAGCAGCTTGTTTCTTAATTTAAGCTGTTGATGATTTGCGGTTATTGAAGAACAGTACAGACTGTTTAGCTGTTGGATTTCTTCATACTGGTGCAATTTCTCACTGTTGCTACATTCTAAGCACTTGAGATGCCCTGGGGCTGACAGTCCCCCTGGATTATATTAGC

Function

symbol description
usp3 Predicted to enable thiol-dependent deubiquitinase and zinc ion binding activity. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Orthologous to human USP3 (ubiquitin specific peptidase 3).

NR:

description
ubiquitin carboxyl-terminal hydrolase 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99883 True 2028 lncRNA 0.41 8 16103616 16108725

Neighbor

gene id symbol gene type direction distance location
ca12 ca12 coding downstream 17982 16055056 ~ 16085634 (-)
man2c1 man2c1,LOC107682572 coding downstream 52039 16040065 ~ 16051577 (-)
sema7a NA coding downstream 76715 16014365 ~ 16026901 (-)
islr2 islr2,LOC107662462 coding downstream 119498 15979981 ~ 15984118 (-)
ccdc33 ccdc33 coding downstream 246955 15839686 ~ 15856661 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding upstream 148613 16257338 ~ 16313325 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 209159 16317884 ~ 16350164 (-)
cib2 cib2,LOC103027299,LOC107573330,LOC107752320,LOC101476243 coding upstream 275824 16384549 ~ 16414345 (-)
acsbg1 NA coding upstream 338771 16447496 ~ 16457754 (-)
LOC103042575 LOC108433637 coding upstream 380922 16489647 ~ 16528087 (-)
LOC111193099 NA non-coding downstream 149803 15853302 ~ 15953813 (-)
G73910 NA non-coding downstream 459364 15643821 ~ 15644252 (-)
G73877 svip non-coding downstream 526118 15572334 ~ 15577498 (-)
G73870 NA non-coding downstream 575154 15448674 ~ 15528462 (-)
G73869 NA non-coding downstream 649006 15449504 ~ 15454610 (-)
G74199 NA non-coding upstream 93799 16202524 ~ 16215525 (-)
G74202 LOC108433646 non-coding upstream 110371 16219096 ~ 16222273 (-)
G74203 NA non-coding upstream 143767 16252492 ~ 16252752 (-)
G74205 NA non-coding upstream 177503 16286228 ~ 16292019 (-)
G74211 NA non-coding upstream 208220 16316945 ~ 16321653 (-)
LOC103046265 pkp3 other downstream 322938 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 689003 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 889332 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1306333 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1558080 14542196 ~ 14545536 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 358364 16467089 ~ 16470323 (-)
nrg4 NA other upstream 1768301 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 1874022 17982747 ~ 18029747 (-)
G74791 NA other upstream 2830449 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 2883943 18992668 ~ 19008366 (-)

Expression


Co-expression Network