LOC103028966 (fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095)


Basic Information

Item Value
gene id LOC103028966
gene name fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8691950 ~ 8726635 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227994.3
CGGCTGTTTGGGGAGTGAGTGGTTTCCATATTCGCAGCGCGAGGCGGACGGAACAACAATATGGAGCCGGAGATGGAGGACAAGACGCTGGAGTTAATGtgcTCTTTGCCTCGCTCTCTCTGGCTGGGTTGTTCCTCGGTAGCAGAGAGCCTGTGCGCTCTCAGGTGCCTGCAGAGCCTCCCCACCTCCCGGGCCCACAACCAGAACTTGACAGTAATGGAGTCACAGAATCTGACTGATGACCTCTCGCCAAAGAAGACCACTGTGTTTAAGCTTAGTAATGGTTCTCTGTCGAGGAAACGTCCGTCTCGGGTGAGCTttgagaaggagaaggagatgTGTATCCAGATGTTCGAGCAGTGGTCAGAAGCTGACCAGGTGGAATTTGTGGAGCACCTAATCTCACGCATGTGCCACTACCAGCACGGCCACATCAACTCTTACCTCAAACCCATGCTGCAGAGAGACTTCATCACTGCACTGCCAgCCCAGGGCCTGGACCACATAGCAGAGAACATCCTGTCGTTCCTGGATGCTCGTTCTCTGTGCTCGGCAGAGCTTGTCTGTCGGGAGTGGCAGAGGGTGATTTCAGAGGGAATGCTTTGGAAGAAGCTTATAGAGAGGATGGTCCGCACTGATCCACTGTGGAAAGGCCTGTCTGAAAGACATCAGTGGGAGAAGTACTTGTTTAAAAACCGCACAAACGAAGTCCCACCTAACTCGTATTATCACTCCCTCTATCCCAAAATCATACAGGACATTGAGACAATTGAGGCAAACTGGCGCTGTGGCAGACACAACTTGCAGAGAATCCAGTGCAGATCAGAGAACAGCAAGGGGGTCTACTGCCTCCAGTACGACGATGATAAGATCATCAGTGGTCTCCGGGACAACTCCATAAAgatCTGGGATAAGCACAGTTTGGAATGTTTAAAGATTCTGACGGGTCACACCGGTTCAGTTCTATGTCTGCAGTATGATGACCGAGTCATAGTGACCGGCTCCTCAGACTCCACTGTCAGGGTGTGGGATGCGAGTTCTGGTGAGGTTCTGAATACTCTGATCCACCATAATGAGGCAGTACTGCACCTGCGTTTCTGTAATGGACTGATGGTGACGTGTTCTAAGGACCGCTCCATCGCCGTGTGGGACATGGCGTCTGCGACTGATATCAGCCTCCGCCGCGTTCTCGTTGGGCACCGGGCCGCTGTGAATGTTGTCGACTTTGATGACAAGTATATCGTCTCAGCATCAGGAGACAGAACTATAAAAgtgtgGAGCACCAGTACATGTGAGTTTGTGCGGACACTAAACGGTCATAAGCGAGGTATCGCCTGCCTCCAGTACAGAGACAGACTGGTGGTCAGTGGATCCTCAGACAACACTATACggttgTGGGATATCGAGTGTGGTGCATGTCTGCGTGTGTTGGAGGGACATGAGGAGCTTGTTCGCTGCATTCGTTTTGACAACAAAAGGATTGTCAGTGGAGCATACGATGGgAAGATTAAAGTGTGGGACCTGCAGGCCGCTTTGGACCCTCGAGCTCCTGCCAGCACTCTGTGCCTGCGCACACTAGtgGAGCATTCTGGGCGTGTGTTCCGTCTGCAGTTTGATGAGTTCCAGATCATCAGCAGTTCCCATGATGACACCATCCTTATATGGGACTTCCTGAATGTCTCTGCTAACGGGCAGTCAGAGGGACGATCGCCCTCTCGCACCTACACGTATATCTCCAGATAGCAGGTGCCTCTAATGTGTGCCAGTGTGTCCTGGGAAAgctgagagctgattggctgttggcTGTGTCTGTCACAGAAAGGTGTCCAGGGAAGCACCTCCTCCTTTTCATCTCTCAAAACTTCTCCAGATGATAACCTTCTCCAGTAACACTCCACAAGTTtagcctcaaaacacacacatacacacacacaaacacacacgcgcacacacacacacgtacacactcaAATGAGCCAAAATAGAcagtgactctctctctctttctttcgctctctctctctctctctctctctctctctctctctc
>XM_022672045.1
CTTCACGCGGCTGTTTGGGGAGTGAGTGGTTTCCATATTCGCAGCGCGAGGCGGACGGAACAACAATATGGAGCCGGAGATGGAGGACAAGACGCTGGAGTTAATGAACTTGACAGTAATGGAGTCACAGAATCTGACTGATGACCTCTCGCCAAAGAAGACCACTGTGTTTAAGCTTAGTAATGGTTCTCTGTCGAGGAAACGTCCGTCTCGGGTGAGCTttgagaaggagaaggagatgTGTATCCAGATGTTCGAGCAGTGGTCAGAAGCTGACCAGGTGGAATTTGTGGAGCACCTAATCTCACGCATGTGCCACTACCAGCACGGCCACATCAACTCTTACCTCAAACCCATGCTGCAGAGAGACTTCATCACTGCACTGCCAgCCCAGGGCCTGGACCACATAGCAGAGAACATCCTGTCGTTCCTGGATGCTCGTTCTCTGTGCTCGGCAGAGCTTGTCTGTCGGGAGTGGCAGAGGGTGATTTCAGAGGGAATGCTTTGGAAGAAGCTTATAGAGAGGATGGTCCGCACTGATCCACTGTGGAAAGGCCTGTCTGAAAGACATCAGTGGGAGAAGTACTTGTTTAAAAACCGCACAAACGAAGTCCCACCTAACTCGTATTATCACTCCCTCTATCCCAAAATCATACAGGACATTGAGACAATTGAGGCAAACTGGCGCTGTGGCAGACACAACTTGCAGAGAATCCAGTGCAGATCAGAGAACAGCAAGGGGGTCTACTGCCTCCAGTACGACGATGATAAGATCATCAGTGGTCTCCGGGACAACTCCATAAAgatCTGGGATAAGCACAGTTTGGAATGTTTAAAGATTCTGACGGGTCACACCGGTTCAGTTCTATGTCTGCAGTATGATGACCGAGTCATAGTGACCGGCTCCTCAGACTCCACTGTCAGGGTGTGGGATGCGAGTTCTGGTGAGGTTCTGAATACTCTGATCCACCATAATGAGGCAGTACTGCACCTGCGTTTCTGTAATGGACTGATGGTGACGTGTTCTAAGGACCGCTCCATCGCCGTGTGGGACATGGCGTCTGCGACTGATATCAGCCTCCGCCGCGTTCTCGTTGGGCACCGGGCCGCTGTGAATGTTGTCGACTTTGATGACAAGTATATCGTCTCAGCATCAGGAGACAGAACTATAAAAgtgtgGAGCACCAGTACATGTGAGTTTGTGCGGACACTAAACGGTCATAAGCGAGGTATCGCCTGCCTCCAGTACAGAGACAGACTGGTGGTCAGTGGATCCTCAGACAACACTATACggttgTGGGATATCGAGTGTGGTGCATGTCTGCGTGTGTTGGAGGGACATGAGGAGCTTGTTCGCTGCATTCGTTTTGACAACAAAAGGATTGTCAGTGGAGCATACGATGGgAAGATTAAAGTGTGGGACCTGCAGGCCGCTTTGGACCCTCGAGCTCCTGCCAGCACTCTGTGCCTGCGCACACTAGtgGAGCATTCTGGGCGTGTGTTCCGTCTGCAGTTTGATGAGTTCCAGATCATCAGCAGTTCCCATGATGACACCATCCTTATATGGGACTTCCTGAATGTCTCTGCTAACGGGCAGTCAGAGGGACGATCGCCCTCTCGCACCTACACGTATATCTCCAGATAGCAGGTGCCTCTAATGTGTGCCAGTGTGTCCTGGGAAAgctgagagctgattggctgttggcTGTGTCTGTCACAGAAAGGTGTCCAGGGAAGCACCTCCTCCTTTTCATCTCTCAAAACTTCTCCAGATGATAACCTTCTCCAGTAACACTCCACAAGTTtagcctcaaaacacacacatacacacacacaaacacacacgcgcacacacacacacgtacacactcaAATGAGCCAAAATAGAcagtgactctctctctctttctttcgctctctctctctctctctctctctctctctctctctc
>XM_022672046.1
CAGAGGGACAGGATTGAGTTAGCTTATATTAGCCCGTAAACACGCGCCGTGTCGCAGGAAAGCCTCGCGCGGATCCGGCGGTGTTGTTGTTAATAGAAAAACGTCAATAATAGGAGAAGAGTTGCAGTCATTGCGGCGACGCTGCGCCACTCACCCCCGGAGCTCCCTCCCCACTGCCCGCCTCATGCGCCTCCTCGGCCGGAACTTGACAGTAATGGAGTCACAGAATCTGACTGATGACCTCTCGCCAAAGAAGACCACTGTGTTTAAGCTTAGTAATGGTTCTCTGTCGAGGAAACGTCCGTCTCGGGTGAGCTttgagaaggagaaggagatgTGTATCCAGATGTTCGAGCAGTGGTCAGAAGCTGACCAGGTGGAATTTGTGGAGCACCTAATCTCACGCATGTGCCACTACCAGCACGGCCACATCAACTCTTACCTCAAACCCATGCTGCAGAGAGACTTCATCACTGCACTGCCAgCCCAGGGCCTGGACCACATAGCAGAGAACATCCTGTCGTTCCTGGATGCTCGTTCTCTGTGCTCGGCAGAGCTTGTCTGTCGGGAGTGGCAGAGGGTGATTTCAGAGGGAATGCTTTGGAAGAAGCTTATAGAGAGGATGGTCCGCACTGATCCACTGTGGAAAGGCCTGTCTGAAAGACATCAGTGGGAGAAGTACTTGTTTAAAAACCGCACAAACGAAGTCCCACCTAACTCGTATTATCACTCCCTCTATCCCAAAATCATACAGGACATTGAGACAATTGAGGCAAACTGGCGCTGTGGCAGACACAACTTGCAGAGAATCCAGTGCAGATCAGAGAACAGCAAGGGGGTCTACTGCCTCCAGTACGACGATGATAAGATCATCAGTGGTCTCCGGGACAACTCCATAAAgatCTGGGATAAGCACAGTTTGGAATGTTTAAAGATTCTGACGGGTCACACCGGTTCAGTTCTATGTCTGCAGTATGATGACCGAGTCATAGTGACCGGCTCCTCAGACTCCACTGTCAGGGTGTGGGATGCGAGTTCTGGTGAGGTTCTGAATACTCTGATCCACCATAATGAGGCAGTACTGCACCTGCGTTTCTGTAATGGACTGATGGTGACGTGTTCTAAGGACCGCTCCATCGCCGTGTGGGACATGGCGTCTGCGACTGATATCAGCCTCCGCCGCGTTCTCGTTGGGCACCGGGCCGCTGTGAATGTTGTCGACTTTGATGACAAGTATATCGTCTCAGCATCAGGAGACAGAACTATAAAAgtgtgGAGCACCAGTACATGTGAGTTTGTGCGGACACTAAACGGTCATAAGCGAGGTATCGCCTGCCTCCAGTACAGAGACAGACTGGTGGTCAGTGGATCCTCAGACAACACTATACggttgTGGGATATCGAGTGTGGTGCATGTCTGCGTGTGTTGGAGGGACATGAGGAGCTTGTTCGCTGCATTCGTTTTGACAACAAAAGGATTGTCAGTGGAGCATACGATGGgAAGATTAAAGTGTGGGACCTGCAGGCCGCTTTGGACCCTCGAGCTCCTGCCAGCACTCTGTGCCTGCGCACACTAGtgGAGCATTCTGGGCGTGTGTTCCGTCTGCAGTTTGATGAGTTCCAGATCATCAGCAGTTCCCATGATGACACCATCCTTATATGGGACTTCCTGAATGTCTCTGCTAACGGGCAGTCAGAGGGACGATCGCCCTCTCGCACCTACACGTATATCTCCAGATAGCAGGTGCCTCTAATGTGTGCCAGTGTGTCCTGGGAAAgctgagagctgattggctgttggcTGTGTCTGTCACAGAAAGGTGTCCAGGGAAGCACCTCCTCCTTTTCATCTCTCAAAACTTCTCCAGATGATAACCTTCTCCAGTAACACTCCACAAGTTtagcctcaaaacacacacatacacacacacaaacacacacgcgcacacacacacacgtacacactcaAATGAGCCAAAATAGAcagtgactctctctctctttctttcgctctctctctctctctctctctctctctctctctctc

Function

symbol description
fbxw11a Predicted to enable snoRNA binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be part of small-subunit processome. Is expressed in brain; head mesenchyme; and retina. Orthologous to human FBXW11 (F-box and WD repeat domain containing 11).

NR:

description
PREDICTED: F-box/WD repeat-containing protein 11-like isoform X1

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03362 FBXW1_11, BTRC, beta-TRCP; F-box and WD-40 domain protein 1/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227994.3 True 2049 mRNA 0.51 14 8691957 8726635
XM_022672045.1 False 1951 mRNA 0.51 13 8691950 8726635
XM_022672046.1 False 2047 mRNA 0.51 13 8692321 8726635

Neighbor

gene id symbol gene type direction distance location
LOC103031395 etf1,LOC108430956,LOC108275025 coding upstream 4481 8674849 ~ 8687469 (+)
spock1 spock1,LOC107747099,LOC107655663 coding upstream 50602 8440137 ~ 8641348 (+)
mars2 mars2 coding upstream 966137 7719880 ~ 7725813 (+)
LOC103027348 LOC103027348,LOC108430938 coding upstream 1017287 7671558 ~ 7674663 (+)
LOC103027052 LOC108430977 coding upstream 1039460 7612712 ~ 7652490 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 83393 8810028 ~ 8819533 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding downstream 99879 8826514 ~ 8857516 (+)
LOC111193048 LOC101884096,LOC108430950,LOC108430926,LOC108430927,LOC107588388,LOC108275115,LOC107747118 coding downstream 135485 8862120 ~ 8868955 (+)
LOC111193085 NA coding downstream 146015 8872650 ~ 8873657 (+)
LOC111193083 NA coding downstream 155228 8881863 ~ 8884188 (+)
G72209 NA non-coding upstream 207187 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 253855 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 271645 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 290472 8401246 ~ 8401478 (+)
G72175 NA non-coding upstream 299473 8392261 ~ 8392477 (+)
LOC111193079 NA non-coding downstream 57937 8784572 ~ 8793176 (+)
G72278 NA non-coding downstream 363241 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 415727 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 500880 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 865672 9592307 ~ 9639931 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 1806409 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2153156 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2734931 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3013076 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 3186312 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 142493 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 416264 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1241871 9968506 ~ 9970042 (+)
G72621 NA other downstream 1351944 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1546284 10272919 ~ 10626964 (+)

Expression


Co-expression Network