LOC103029481 (fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086)


Basic Information

Item Value
gene id LOC103029481
gene name fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8735077 ~ 8758128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227996.3
gagagagagagagagagagagagagagagagagagagagagagagagagaggagggtaTCCTGACTTTTGCCTGCAGCTGCTCTGCACTTCAGCTCGGTGCTCGAGAAAGGAGGGAGTTGTAAACTTTCTCTATAAAAGAAAAAGCATTATAAGAATAAATCAAAGGCTAGGAGTGCGTTTTTCCCCCTCCACTTTCAAACCGTTTCGCACTGATGTCATCGCGCTGGCGTTTGACTGCGGGAGAAGCGCGGTGAACGCCGGGAAATCAGGTGCAGGGGAGCCGCGGGGTGGCCGGTGAATAGCCACTGGGTCAAAGctgctctctcctcctcctcctcctcctcctcctcctcctcctccttcttcttcatcttctcttTTACCCCCTCCCCTCCTCAACTCTACAGTGCTTTCCTGCCCTGCAAAGTAATCTTCCCTCCGTCACTCGCAGCCATGCGCGACACGGTCTTCCTTCTTTCCTCCCTCGGGAATACGGGGGAAGATACAATGATCATCACCAGCaacatcatcgtcatcatcagcAGCGGCAACCCTAAAACTGGACCCTGGACAACCTGTTTCCCATGGGACGCACGACTGTGAGCGCACAGCTCCAACGACTGGACTGAACCAAACGCACGGAACTCGTTTGGAGTATCTTATACAATTGgtgtaaagataaaaaaactccaaacagggacagcagcagcagcaaactTCACACGGGACATGGACAACAACAGTTGGAGGACATACATAAGGCTGTGAACGCACAGCCCCAACCAGAACCTGACCGTTTCGTGCTCGGAGttggctgcaaaaaaaaagagtcattTTTGGTCTTTTTGGCCACTGCAGCCAAGCTTGGCCGGAGGTGGCGCGGAGCTGCTGGGTGTAATCGGGGCTCGAACTCCGCTTCACCTGTTCCCCACTCCCTGGAGAGCACAGCTGTTATGCCCTAAAGCCACCCCCTCCTCACACCGCCACCAACCTCCCCCTACTACCCCacccctcctctcctcttcccttcccctctcttctcttcccaCCACcactcctcctccccctcttcTTCCCCCTCGCGCTCCCGCTGCCCCGCCCCTACCCGTTTACCGAGCGCAGCCGCCGTCCCGTCGCTCCCGGTGGCACACTGCGCCGCGCGCTCCTCGATTCCTCAACCCACCagcacacaggacacacacctcCTCCTGAGGCTATGTACGCCGCCGGCAGCAGGCGGGAACCTCCGCTGACCTCGTGACCTCGTGGCCATCCCATCCCATCATATTCCATCCCGTCTGGCCATCGGATCGGCACGTCAAGACGTAAGCTGGGGAAGCTGAGCTGAAGCAACCTCCTTTTCCATAAAAAGGCGCACGGAGCGAGCGGGACGCAGAGGCAGGGAGCGATGTGGTCCTTTCTCTCCACGCTGGCTGTCTTGTGTATCCAGATGATGCTGGTGATGTGCAATCCTCTGCAgGTGTTCGGAGCTGATGGTGTGAACTTCAGCATGCATGTAGAGAATCAGACTCGCGCACGAGACGCCATGAGCCGGAGACAGCCCCGAGTCTACCAGCTCTACAGCCGGACCAGCTGCAAACACGTCCAGGTGCTGGGCCGCAAGATAAGCGCCCGTGGAGAGGATGGTGACATATTCgCCCAGCTTGTAGTGGAGGCGGACACCTTTGGCAGCCAGGTGCGAATCAGGGGGAAGGAAACCAACTACTACCTGTGCATGAACCGCAGGGGGAAACTCGTAGGCAAGAAGGCCAGCAATCGTAGTCAAGACTGTGTCTTCGTGGAGATGGTGTTGGAGAACAACTACACAGCACTAATGTCAGCACGATACAATGGCTGGTATGTTGGCTTTACCAAAAGGGGCCGCCCCCGACGTGGTCCACATACGCTTCTTAACCAGCAAGACGTTCACTTTATGAAGCGTTCGCCTCCGGGAGAGCAGCCGGACCACACGCCCTTCCGCTTCACCACCGTCAGCAAGAGGAGCAAAAGAGTGCGTGCTGCACGACCGCGTTAGCCTACGCTAAATTCCACTGTCCCTCTATGGGACCCTGCTAAATACTGAAATCAGGGCCTACTAACAAAAGACATTCCTAGACTGCAGCCCTGTTAATGGGACCATGCTAATGCCAACTACAGGACCTGGTGCGGATGGAACGTTGGAAAGTCAGACTCCTTTTGACTGGCTAAAGGACAATGCAAAGTGTGGATGGCTTTCCGTTTTGAAGGGTCAGCGGTATTGTACTGTAGCATCCTTCAGTAAACAGGATCTAAACTGGACCTGCTAGCGTACCAAAAACACTTGCTACTCCCCACCAGAGCCTTGACTTGGCCTGGTGTTGACATACTAAACCAAGCCCAAACCGAAAAGCTCGGTGGAACTTAATGCAATGACAAGCTCTAGCCATTTACCATGGCATAAggaagcaaaaacaaacaaaggtaAACTAACAGCCCCCACTACAGTATGGGGGGGAACACCGACCGAGTAGCCTACTAACCCAGCTATCGCTTCCAGACGCTTTACGAGAGGGGTACTCTTTTCCACAGCATAATCTTTACTCAGGATTCCCAGAGCAAGATTCACCTGGAACTGGACTGACATGGCTGGGAGACAAGTGAGAAAAGGTTTCTGGACTGAGTCATTTCTAAAGGACTCGGAAGTGAAAAAGAGGAGAGGCTTCAAATgaaatctctctttttttgctctGCCTGCAAGCTAGTATGAATgtgttgaatgtgtgtgtgcatgtgtgtcgTGTTTCAAATTGCACCAAAGACCACATTGGATGCTACCACAGATGACTGAGGAGTGCATCTGTGTACACGAACTTAGGAAAACATAGCCTACCTATGGCTGGAAGAACCTACTAAAACtggaatgtaataaaaaaagaagaaacattgAGAAACTCCTTAAGAAAGCTGCACCAAAAATGACCTAACAACCAAAGACAACTGGAGACCAATGATGAACATGACAACCCCCCACATCCTACAGCCTCTGAAGCCATTACAGCCTGTCAGGGTAGagcacccagcagtgagacagAAAAAGGGGCGGGGTTGCTTTTGGAACGACACAAGGAGCAACGTTCCCGTTTGGGTTTCAATCGGAATGCTGCTAGTGGAAACTTCAACCAAAGTCACTTATTATTAAAAGGGAAGacaaacatacaataaataaaactatatatataaatatatgtaaagagCAAAGCTAAATAAGCGATATTACTATGACTGCTACTATAATTGTTGTTACTATAAAGtttatttcacttatttatttCATCTCTGTGTATGGCAATCTTTCTAAAGCCAGTAAACTCTACAGAAATTGTCTGTGTTTTAAAACAACACTACAGCGGctgtctgtctctttgtgttatcacttttactcttttcatCGACAAGCTGTCCATGTTGTTCTTTAGGAGGCAGCAAGGGGTCATCTAAgcacatggtaaaata
>XM_007227997.3
gagagagagagagagagagagagagagagagagagagagagagagagagagaggagggtaTCCTGACTTTTGCCTGCAGCTGCTCTGCACTTCAGCTCGGTGCTCGAGAAAGGAGGGAGTTGTAAACTTTCTCTATAAAAGAAAAAGCATTATAAGAATAAATCAAAGGCTAGGAGTGCGTTTTTCCCCCTCCACTTTCAAACCGTTTCGCACTGATGTCATCGCGCTGGCGTTTGACTGCGGGAGAAGCGCGGTGAACGCCGGGAAATCAGGTGCAGGGGAGCCGCGGGGTGGCCGGTGAATAGCCACTGGGTCAAAGctgctctctcctcctcctcctcctcctcctcctcctcctcctccttcttcttcatcttctcttTTACCCCCTCCCCTCCTCAACTCTACAGTGCTTTCCTGCCCTGCAAAGTAATCTTCCCTCCGTCACTCGCAGCCATGCGCGACACGGTCTTCCTTCTTTCCTCCCTCGGGAATACGGGGGAAGATACAATGATCATCACCAGCaacatcatcgtcatcatcagcAGCGGCAACCCTAAAACTGGACCCTGGACAACCTGTTTCCCATGGGACGCACGACTGTGAGCGCACAGCTCCAACGACTGGACTGAACCAAACGCACGGAACTCGTTTGGAGTATCTTATACAATTGgtgtaaagataaaaaaactccaaacagggacagcagcagcagcaaactTCACACGGGACATGGACAACAACAGTTGGAGGACATACATAAGGCTGTGAACGCACAGCCCCAACCAGAACCTGACCGTTTCGTGCTCGGAGttggctgcaaaaaaaaagagtcattTTTGGTCTTTTTGGCCACTGCAGCCAAGCTTGGCCGGAGGTGGCGCGGAGCTGCTGGGTGTAATCGGGGCTCGAACTCCGCTTCACCTGTTCCCCACTCCCTGGAGAGCACAGCTGTTATGCCCTAAAGCCACCCCCTCCTCACACCGCCACCAACCTCCCCCTACTACCCCacccctcctctcctcttcccttcccctctcttctcttcccaCCACcactcctcctccccctcttcTTCCCCCTCGCGCTCCCGCTGCCCCGCCCCTACCCGTTTACCGAGCGCAGCCGCCGTCCCGTCGCTCCCGGTGGCACACTGCGCCGCGCGCTCCTCGATTCCTCAACCCACCagcacacaggacacacacctcCTCCTGAGGCTATGTACGCCGCCGGCAGCAGGCGGGAACCTCCGCTGACCTCGTGACCTCGTGGCCATCCCATCCCATCATATTCCATCCCGTCTGGCCATCGGATCGGCACGTCAAGACGTAAGCTGGGGAAGCTGAGCTGAAGCAACCTCCTTTTCCATAAAAAGGCGCACGGAGCGAGCGGGACGCAGAGGCAGGGAGCGATGTGGTCCTTTCTCTCCACGCTGGCTGTCTTGTGTATCCAGATGATGCTGGTGATGTGCAATCCTCTGCAgGTGTTCGGAGCTGATGGTGTGAACTTCAGCATGCATGTAGAGAATCAGACTCGCGCACGAGACGCCATGAGCCGGAGACAGCCCCGAGTCTACCAGCTCTACAGCCGGACCAGCTGCAAACACGTCCAGGTGCTGGGCCGCAAGATAAGCGCCCGTGGAGAGGATGGTGACATATTCgCCCAGCTTGTAGTGGAGGCGGACACCTTTGGCAGCCAGGTGCGAATCAGGGGGAAGGAAACCAACTACTACCTGTGCATGAACCGCAGGGGGAAACTCGTAGGCAAGGCCAGCAATCGTAGTCAAGACTGTGTCTTCGTGGAGATGGTGTTGGAGAACAACTACACAGCACTAATGTCAGCACGATACAATGGCTGGTATGTTGGCTTTACCAAAAGGGGCCGCCCCCGACGTGGTCCACATACGCTTCTTAACCAGCAAGACGTTCACTTTATGAAGCGTTCGCCTCCGGGAGAGCAGCCGGACCACACGCCCTTCCGCTTCACCACCGTCAGCAAGAGGAGCAAAAGAGTGCGTGCTGCACGACCGCGTTAGCCTACGCTAAATTCCACTGTCCCTCTATGGGACCCTGCTAAATACTGAAATCAGGGCCTACTAACAAAAGACATTCCTAGACTGCAGCCCTGTTAATGGGACCATGCTAATGCCAACTACAGGACCTGGTGCGGATGGAACGTTGGAAAGTCAGACTCCTTTTGACTGGCTAAAGGACAATGCAAAGTGTGGATGGCTTTCCGTTTTGAAGGGTCAGCGGTATTGTACTGTAGCATCCTTCAGTAAACAGGATCTAAACTGGACCTGCTAGCGTACCAAAAACACTTGCTACTCCCCACCAGAGCCTTGACTTGGCCTGGTGTTGACATACTAAACCAAGCCCAAACCGAAAAGCTCGGTGGAACTTAATGCAATGACAAGCTCTAGCCATTTACCATGGCATAAggaagcaaaaacaaacaaaggtaAACTAACAGCCCCCACTACAGTATGGGGGGGAACACCGACCGAGTAGCCTACTAACCCAGCTATCGCTTCCAGACGCTTTACGAGAGGGGTACTCTTTTCCACAGCATAATCTTTACTCAGGATTCCCAGAGCAAGATTCACCTGGAACTGGACTGACATGGCTGGGAGACAAGTGAGAAAAGGTTTCTGGACTGAGTCATTTCTAAAGGACTCGGAAGTGAAAAAGAGGAGAGGCTTCAAATgaaatctctctttttttgctctGCCTGCAAGCTAGTATGAATgtgttgaatgtgtgtgtgcatgtgtgtcgTGTTTCAAATTGCACCAAAGACCACATTGGATGCTACCACAGATGACTGAGGAGTGCATCTGTGTACACGAACTTAGGAAAACATAGCCTACCTATGGCTGGAAGAACCTACTAAAACtggaatgtaataaaaaaagaagaaacattgAGAAACTCCTTAAGAAAGCTGCACCAAAAATGACCTAACAACCAAAGACAACTGGAGACCAATGATGAACATGACAACCCCCCACATCCTACAGCCTCTGAAGCCATTACAGCCTGTCAGGGTAGagcacccagcagtgagacagAAAAAGGGGCGGGGTTGCTTTTGGAACGACACAAGGAGCAACGTTCCCGTTTGGGTTTCAATCGGAATGCTGCTAGTGGAAACTTCAACCAAAGTCACTTATTATTAAAAGGGAAGacaaacatacaataaataaaactatatatataaatatatgtaaagagCAAAGCTAAATAAGCGATATTACTATGACTGCTACTATAATTGTTGTTACTATAAAGtttatttcacttatttatttCATCTCTGTGTATGGCAATCTTTCTAAAGCCAGTAAACTCTACAGAAATTGTCTGTGTTTTAAAACAACACTACAGCGGctgtctgtctctttgtgttatcacttttactcttttcatCGACAAGCTGTCCATGTTGTTCTTTAGGAGGCAGCAAGGGGTCATCTAAgcacatggtaaaataa

Function

symbol description
fgf18a Predicted to enable growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Predicted to be involved in several processes, including fibroblast growth factor receptor signaling pathway; positive regulation of cell population proliferation; and positive regulation of macromolecule metabolic process. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including heart primordium; optic vesicle; otic vesicle; pleuroperitoneal region; and sensory system. Orthologous to human FGF18 (fibroblast growth factor 18).

NR:

description
fibroblast growth factor 18-like isoform X2

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227996.3 False 3493 mRNA 0.51 5 8735078 8758126
XM_007227997.3 True 3493 mRNA 0.51 5 8735077 8758128

Neighbor

gene id symbol gene type direction distance location
enox2 enox2 coding downstream 560183 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 966716 7726618 ~ 7768361 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding downstream 1016021 7699890 ~ 7719056 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding downstream 1038169 7690185 ~ 7696908 (-)
LOC103026574 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889 coding downstream 1049711 7676287 ~ 7685366 (-)
mfsd7 mfsd7 coding upstream 494738 9252866 ~ 9276501 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding upstream 786810 9544938 ~ 9625510 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 1200392 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 1315101 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 1408199 10166327 ~ 10184846 (-)
G72357 NA non-coding downstream 7324 8726340 ~ 8727753 (-)
G72345 fbxw11a non-coding downstream 32762 8701883 ~ 8702315 (-)
G72329 NA non-coding downstream 237204 8483358 ~ 8497873 (-)
G72317 NA non-coding downstream 292351 8441765 ~ 8442726 (-)
G72315 NA non-coding downstream 333833 8400868 ~ 8401244 (-)
G72370 NA non-coding upstream 95768 8853896 ~ 8857516 (-)
G72404 NA non-coding upstream 251299 9009427 ~ 9036029 (-)
G72436 NA non-coding upstream 358832 9116960 ~ 9126594 (-)
G72437 LOC107655635,LOC108438829,LOC107754498,LOC108438834,LOC107747110,LOC107754548,LOC108438831,LOC108274935,LOC107655634 non-coding upstream 364516 9122644 ~ 9143407 (-)
G72443 LOC108438833,LOC108438834,LOC108438829,LOC107596372 non-coding upstream 384342 9142470 ~ 9158122 (-)
G72336 NA other downstream 89476 8639538 ~ 8645601 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 892797 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 1144523 7551185 ~ 7590554 (-)
G71862 NA other downstream 1422151 7309775 ~ 7312926 (-)
G71826 NA other downstream 1677434 7057110 ~ 7057643 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 407750 9165878 ~ 9174309 (-)
G72453 NA other upstream 430271 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 1042927 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 1098271 9856399 ~ 9902893 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 1293824 10051952 ~ 10054034 (-)

Expression


Co-expression Network