LOC103043406 (smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743)


Basic Information

Item Value
gene id LOC103043406
gene name smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9791271 ~ 9799463 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228037.3
AGTGGTCGCAGGGTGGCGCTGAGTGTCGGCGGTGTTCAGCAGGAGCGCAGAGCAGGAGTCCGGACGTTTCTACAGCCCGTGCTGTTTGTTTGAGTGCGTGTCGTGTCTGCCACTGATACTAAATCTACACCATGTCTTTGGAGATCGAGTCAGCAGAcgTAATCCGTCTGATCATGCAGTACTTAAAGGAAAATAACCTGCATCGCACACTGGCAACACTGCAGGAGGAGACCACCGTATCCCTCAACACAGTGGACAGTATTGAAAGTTTTGTGGCTGACATTAACAGCGGTCACTGGGACACTGTACTACAGGCTATCCAGTCCCTCAAGCTGCCAGACAAGACCCTGATTGATCTGTATGAACAGGTTGTGCTGGAGCTGATTGAGCTGAGAGAATTGGGAGCTGCCAGGTCTTTGCTGAGACAAACTGACCCCATGATTATGCTGAAACAGACTCAGCCTGAGAGGTACATTCACCTGGAGAACCTGCTGGCCCGCTCCTACTTCGACCCCAGAGAGGCTTACCCTGATGGCAGCAGTAAGGAAAAGCGCCGAGCAGCCATTGCCCAGGCGTTGGCTGGCGAGGTCAGTGTGGTGCCTCCTTCACGTCTCATGGCTCTGCTTGGACAGtCTCTGAAGTGGCAGCAGCACCAGGGTCTTCTGCCTCCTGGTATGACTATCGACTTGTTCAGAGGCAAAGCTGCAGTGAAGGATGTAGAGGAAGAGCGATTCCCCACCCAGCTGAGCAGACACATCAAGtttggTCAGAAGTCTCACGTGGAGTGCTCCCGCTTCTCTCCGGATGGTCAGTATTTGGTCACTGGCTCTGTTGATGGCTTCATTGAGGTGTGGAACTTCACCACAGGCAAGATCAGaaagGATCTGAAGTACCAGGCGCAGGATAATTTTATGATGATGGACGACGCTGTGCTGTGCATGTGTTTTAGCAGAGATACAGAGATGCTGGCTACAGGAGCTCAGGATGGCAAAATAAAGGTGTGGAAGATCCAGAGTGGTCAGTGTCTGCGCCGGTTTGAGCGTGCTCACAGTAAAGGTGTGACCTGTGTGAGCTTCTCCAAAGACAGCAGTCAACTTCTTTCAGCCTCGTTTGACCAAACAATCAGaGTTCATGGGCTAAAATCAGGCAAGTCTCTGAAGGAGTTCCGAGGCCACTCTTCATTCGTTAATGAAGCCACATTCACTCCTGATGGCCACCATATTATCAGTGCTTCTTCTGATGGCACGGTGAAGatttggAACGTGAAAACCACCGAGTGCACAAGCACATTTAAATCTCTCGGCGCCTCAGCTGGCACGGACATTACTGTGAACAACGTCATCCTCCTTCCCAAGAACCCAGAGCATTTTGTAGTCTGTAACCGCTCCAACACTGTGGTCATTATGAACATGCAGGGCCAGATTGTGAGGAGTTTCAGCTCTGGTAAGCGAGAGGGCTGCACACTTTCCCCCAGAGGAGAGTGGATCTACTGCGTGGGAGAGGACTTCGTGCTCTACTGCTTCAGCACAGTCACTGGCAAACTGGAGAGAACCTTGACAGTACACGAGAAGGATGTGATTGGTATTGCCCACCACCCTCATCAGAACTTGATCTCTACATATAGTGAAGATGGTCTTCTCAAGCTTTGGAAACCTTAAAACATTAGCCATGACCAGAATATTCCTAGGATAACtttgcaagttttttttgtagatatttttttatttgagtgacaggttgagttttctttttttcagtttgaaagcaaaaaaaaaatatcggGACAGGTGGACCTTTCCTCTCCAATGTTCTGTACCCTTGTCATTGTGATTGTTTAACAGCAAGTAATTGTCAATATTTTCaagtattttacataaaatgttttctttaacctttacaattaaaacatttttgatcacaaa

Function

symbol description
smu1 Involved in mRNA splicing, via spliceosome. Located in nucleus. Part of U2-type precatalytic spliceosome.

NR:

description
PREDICTED: WD40 repeat-containing protein SMU1

GO: NA

KEGG:

id description
K13111 SMU1; WD40 repeat-containing protein SMU1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228037.3 True 1922 mRNA 0.48 13 9791271 9799463

Neighbor

gene id symbol gene type direction distance location
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding upstream 442844 9276546 ~ 9348427 (+)
LOC111188173 LOC108438827 coding upstream 565712 9196453 ~ 9225559 (+)
LOC107197946 LOC108438827 coding upstream 596756 9187244 ~ 9194515 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding upstream 616372 9171322 ~ 9174899 (+)
LOC111193086 LOC108438829,LOC108438834,LOC108274931,LOC108274933 coding upstream 628528 9158954 ~ 9162743 (+)
tbc1d2 tbc1d2 coding downstream 27824 9827287 ~ 9853057 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding downstream 110943 9910406 ~ 9957528 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding downstream 174761 9974224 ~ 9977824 (+)
irf7 NA coding downstream 265953 10065416 ~ 10073101 (+)
hras hras,rash,LOC107562835,LOC103357265 coding downstream 386274 10185737 ~ 10206122 (+)
G72514 NA non-coding upstream 17672 9773199 ~ 9773599 (+)
G72503 NA non-coding upstream 69389 9720971 ~ 9721882 (+)
G72500 NA non-coding upstream 73356 9717673 ~ 9717915 (+)
G72496 NA non-coding upstream 81057 9708437 ~ 9710214 (+)
G72488 NA non-coding upstream 92273 9692669 ~ 9698998 (+)
G72606 NA non-coding downstream 178512 9977975 ~ 9978422 (+)
G72612 NA non-coding downstream 229020 10028483 ~ 10028846 (+)
G72615 NA non-coding downstream 258020 10057483 ~ 10057818 (+)
G72617 NA non-coding downstream 259222 10058685 ~ 10058886 (+)
LOC111193092 NA non-coding downstream 297796 10097259 ~ 10099145 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 641852 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 755245 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2905730 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 3252477 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3834252 5871090 ~ 5957019 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 169043 9968506 ~ 9970042 (+)
G72621 NA other downstream 279116 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 473456 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3072021 12871484 ~ 12897931 (+)
G73533 NA other downstream 4849366 14648829 ~ 14649551 (+)

Expression


Co-expression Network