thg1l (thg1l,LOC103154062,LOC106912903,LOC107751338)


Basic Information

Item Value
gene id thg1l
gene name thg1l,LOC103154062,LOC106912903,LOC107751338
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9974224 ~ 9977824 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228041.3
TTGTTTTTGACGGAAACAAGTCGACGGACCAACACAATGCCCGGACTCGCACGTGTGTTTCGGTGGGAGTGTGTTGTGGAGGGTAAATCATAGATACGCTGCTGTAGATCTCTATCAGGAGCGGATCCCGCTGTGATGGGGTGTATTTGAGAGCTGGATAAAGGGACCCAGCTTGTCTGTCTGGCTGTGTTCGCTGGTTTTCAGGCTcctgcagcagaagcagcagcagtagtggcTCTATGCTGAGGCCGGTCTCCGCGCTTTTCGAGAAGTTCAGCAGGATCAGCTGCCACCGCTCACTGCCCAGCACCAGCACTGTCAGCGCCATGGCCAAAAGCAAGTACGAGTATGTGAGGAATTTCGAGACTGATGACACCTGCCTCAGAAACTGCTACATAGTCGTGCGGCTGGATGGAAGGAATTTCCACAAgtttgctgACCAGCACAACTTTACCAAGCCCAACGATGACAGAGCTTTAGGTCTGATGTCACGCAGTGCCCGCTCAGTTATGGAGGACCTGGAGGACATTGCTATAGCATATGGCCAGAGTGATGAGTTCAGCTTTGTCTTCAAAAAATCCACCAACTGGTTCAAAAGAAGAGCAAGCAAACTAATGACCCATGTGGCATCCCAGTTCTCCTCCagttatgtgtttttttggaaGGAGTATTTTGGAGAGCAGCCACTGCTCTACCCACCAGGATTTGATGGCAGGGTTGTATTATATCCTAGCAACCGTAACCTTAGAGACTACTTAAGCTGGAGACAAGCCGACTGTCACATTAACAACTTGTACAACACAGCGTTCTGGACACTGGTGCAGAAGGGTGGGCTCAGTAAAACTCAGGCAGAAGAACGACTAAATGGCACTTTGTCTGGGGATAAGaatgagattttattttccGAATTCAATCTCAATTACAACAATGAATGTGCATTGCACAGAAAAGGCACTACGTTGATTTGGGAAAAGGTTGATGAAACATCgactaaaaaaataactgtgCCCAAAGAGGGGGAGAAGGAGGTCACTTTTACTCGGACCAGACGGAAAGTTACGGCTCATTATTGTGACATTATCGCAGATTCATTCTGGAATGAGCATCCAGATATATTAGAAGAGGACTGTTAAGTGAGCATGAAGGAATGCTGGGCTGCACACTGTTTTATGGACCATAGAGACTTTCAGAAAAAagtatgaatattttttatttgattttttttttttcagtaaataaaaaatttaacattA
>XM_015600832.2
ATGGCCAGAGTGATGAGTTCAGCTTTGTCTTCAAAAAATCCACCAACTGGTTCAAAAGAAGAGCAAGGATTTGATGGCAGGGTTGTATTATATCCTAGCAACCGTAACCTTAGAGACTACTTAAGCTGGAGACAAGCCGACTGTCACATTAACAACTTGTACAACACAGCGTTCTGGACACTGGTGCAGAAGGGTGGGCTCAGTAAAACTCAGGCAGAAGAACGACTAAATGGCACTTTGTCTGGGGATAAGaatgagattttattttccGAATTCAATCTCAATTACAACAATGAATGTGCATTGCACAGAAAAGGCACTACGTTGATTTGGGAAAAGGTTGATGAAACATCgactaaaaaaataactgtgCCCAAAGAGGGGGAGAAGGAGGTCACTTTTACTCGGACCAGACGGAAAGTTACGGCTCATTATTGTGACATTATCGCAGATTCATTCTGGAATGAGCATCCAGATATATTAGAAGAGGACTGTTAAGTGAGCATGAAGGAATGCTGGGCTGCACACTGTTTTATGGACCATAGAGACTTTCAGAAAAAagtatgaatattttttatttgattttttttttttcagtaaataaaaaatttaacattA

Function

symbol description
thg1l Predicted to enable tRNA guanylyltransferase activity. Predicted to be involved in tRNA processing. Predicted to act upstream of or within tRNA modification. Human ortholog(s) of this gene implicated in autosomal recessive cerebellar ataxia. Orthologous to human THG1L (tRNA-histidine guanylyltransferase 1 like).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0008193 tRNA guanylyltransferase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K10761 THG1; tRNA(His) guanylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228041.3 True 1253 mRNA 0.46 6 9974224 9977824
XM_015600832.2 False 618 mRNA 0.39 5 9976375 9977824

Neighbor

gene id symbol gene type direction distance location
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding upstream 16696 9910406 ~ 9957528 (+)
tbc1d2 tbc1d2 coding upstream 121167 9827287 ~ 9853057 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding upstream 174761 9791271 ~ 9799463 (+)
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding upstream 625797 9276546 ~ 9348427 (+)
LOC111188173 LOC108438827 coding upstream 748665 9196453 ~ 9225559 (+)
irf7 NA coding downstream 87592 10065416 ~ 10073101 (+)
hras hras,rash,LOC107562835,LOC103357265 coding downstream 207913 10185737 ~ 10206122 (+)
LOC103047796 NA coding downstream 229885 10207709 ~ 10212496 (+)
tsg101 tsg101,tsg101a coding downstream 234739 10212563 ~ 10221827 (+)
igsf22 igsf22 coding downstream 997897 10975721 ~ 11000591 (+)
G72514 NA non-coding upstream 200625 9773199 ~ 9773599 (+)
G72503 NA non-coding upstream 252342 9720971 ~ 9721882 (+)
G72500 NA non-coding upstream 256309 9717673 ~ 9717915 (+)
G72496 NA non-coding upstream 264010 9708437 ~ 9710214 (+)
G72488 NA non-coding upstream 275226 9692669 ~ 9698998 (+)
G72606 NA non-coding downstream 151 9977975 ~ 9978422 (+)
G72612 NA non-coding downstream 50659 10028483 ~ 10028846 (+)
G72615 NA non-coding downstream 79659 10057483 ~ 10057818 (+)
G72617 NA non-coding downstream 80861 10058685 ~ 10058886 (+)
LOC111193092 NA non-coding downstream 119435 10097259 ~ 10099145 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4182 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 824805 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 938198 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 3088683 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 3435430 6525641 ~ 6538794 (+)
G72621 NA other downstream 100755 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 295095 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 2893660 12871484 ~ 12897931 (+)
G73533 NA other downstream 4671005 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 4913710 14891534 ~ 14921003 (+)

Expression


Co-expression Network