irf7


Basic Information

Item Value
gene id irf7
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10065416 ~ 10073101 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228043.3
TCGCTCTACCAGGTCCACTTCCAGCCACGCCCCCGCGCTCCACCGCGCGCCTCCAGATAAATACTGCAGCTGCTGGAGAGGAGAAGTGAGTGAAGTGCAGCATGTTTATATGAGCCACCTGATCGAGAGAAGCACCGAAGAGAGCAGCAGCATGGCGAAGCCTCAGTTTGGTTCATGGCTATTAGAGCAAGTGCAGGCTGGAAGGTATGAGGGTCTTTACATGACTGGCACAGACACTTTCCGCATCCCTTGGAAGCACAACTCTAGAAAAGACTGCGGCAATGAGGACAACAGAATATTTAGAGAGTGGGCTGTGGTTAGTGGCAAAATCTCTGATTATCCCAACGATAAGGCCAAGTGGAAGACCAACTTCCGCTGTGCTCTCAACAGCCTCAAGCACTTTAAGATGGTGGAGGATCACTCCAAAGACTACCACGATGACCCCCACAAAATCTACCGCATCGTTCGCCCTGAAAACATCCACAATGAGGAGATGTACAAGACAGAAGACATCCCAATGGagCGTGAGGATTTGCCATTTAACCTGGACACTCTGCATCTCGATTATTCTGaTTACCAGCAATGGGGAAACTATTCGCAGCCTATAGCAGATCAAGGCAACTACTTTGCAAATCCTGTGCCGGAAGTTATTCTGCAACCTTGTCCGCAGAGTAACATTCCAGCTCCAGTACCTGctctactaccaccaccacaacAACACTACGCTGCAGTGCCTCCATTTGAGAACCTGCCCTTTCCATTCGAGCTGGAGATCTCCATTCACTACAGGGGAGCCGAGAAGCTGAAGGTCCAGAGCTCAGCTCAGTCTGTTCAACTCCACTACCACTGCGATCCGTCTCAGCTGAGTGGCCAGTCCATCCTTTTCCCCTGCACTGAAGGCCTTACGGACCAGATACAGGTCGAGTACACCAAGCGCCTCCTGGACAGCATCCAGAGGGGCCTGCTGCTGGAGGTGTGCCCAACAGGAATCTATGGCCTCCGCCAAGACAAGTGCAATGTGTTTTTTAGCACCAGAGATCCTGCCGAGATTCAGAACCCAGAGCCCAAAAAGCTGCCCCAGAACTGCAAGGAACTTCTGTTTAGCTTCGAAAAGTACACCAAAGATCTCATGGATTTCCAAAGCCACCAGCGTGGATCGCCTGACTACACGATCTATTTGTGCTTCGGGGAGAAATTCCCTGATGGAAAGGCCCTGGAGAAAAAACTGATAATCGTAAAGGTTGTGCCTCTGATCTGCCGTGAGCTTCACAAGAGAGCGCAGATGGAGGGAGCATCATCTCTGCATAACGACAACATCAGCCTGCAGATCTCCTACAGCCTGTTCGAACTCATTGAGTCCACCTTCCTTCTACCCACATTTGACTGAAGTTTCACTATTTAAAACACTTCAAACAAGTTTCTCTCCATTCTTCTTAACACTTACTCTTACACAGTCTGTCTGGACTTAAGATTTTCAGATAATAAATGTGTCTTAAATGTAACTCTTCCCATAGTAGAACTAGTAAACATAGTAAAAATGGGACGGTTGTGAGACAGGAGTCTCTACCTTTCCTGCTTCAAGTTTAACCAGTTTCGATATAAGTTCTCAGTAAAACAACTTGAAGTAATTAGTTCTCCAAACTGGAAAACACCCCAAGCCCAGCTTCTGGCAGGACCAGTATGTTGACAATTTAAAGTTTACATCTTGTAATGTTCcattacattttttcttttaaagccaAGTCTTCCCACTCACTTCATTAATGAGGCAGTAACTGGGACGGTTGTGAGACAGGAGTCTCTACCTTTCCTGCTTCAAGTTTAACCAGTTTCGATATAAGTTCTCAGTAAAACAACTTGAAGTAATTAGTTCTCCAAACTGGAAAACACCCCAAGCCCCAGCTTCAGGCAGGACCAGTATGTTGACAATTTAAAGTTTACATCTTGTAATGTTCcattacattttttcttttaaagccaAGTCTTCCCACTCACTTCATTAATGAGGCAGTAACCTCATTTTGGTATTTATATCTTCTAATGAAGAATTCCCCTTGCTCTGCACTTGTAAGGGCTGATCTTGTAATACTTTCTTGtctgttattttaaattattctttGTTTAGCTTGGTATGTTGAAAACTGAAAGGTTGTATCTGTTTTTGTATGAACctgagaataaataaatatatacatatacaaaaacacactgtaA
>XM_007228044.3
CGCTCTACCAGGTCCACTTCCAGCCACGCCCCCGCGCTCCACCGCGCGCCTCCAGATAAATACTGCAGCTGCTGGAGAGGAGAAGTGAGTGAAGTGCAGCATGTTTATATGAGCCACCTGATCGAGAGAAGCACCGAAGAGAGCAGCATGGCGAAGCCTCAGTTTGGTTCATGGCTATTAGAGCAAGTGCAGGCTGGAAGGTATGAGGGTCTTTACATGACTGGCACAGACACTTTCCGCATCCCTTGGAAGCACAACTCTAGAAAAGACTGCGGCAATGAGGACAACAGAATATTTAGAGAGTGGGCTGTGGTTAGTGGCAAAATCTCTGATTATCCCAACGATAAGGCCAAGTGGAAGACCAACTTCCGCTGTGCTCTCAACAGCCTCAAGCACTTTAAGATGGTGGAGGATCACTCCAAAGACTACCACGATGACCCCCACAAAATCTACCGCATCGTTCGCCCTGAAAACATCCACAATGAGGAGATGTACAAGACAGAAGACATCCCAATGGagCGTGAGGATTTGCCATTTAACCTGGACACTCTGCATCTCGATTATTCTGaTTACCAGCAATGGGGAAACTATTCGCAGCCTATAGCAGATCAAGGCAACTACTTTGCAAATCCTGTGCCGGAAGTTATTCTGCAACCTTGTCCGCAGAGTAACATTCCAGCTCCAGTACCTGctctactaccaccaccacaacAACACTACGCTGCAGTGCCTCCATTTGAGAACCTGCCCTTTCCATTCGAGCTGGAGATCTCCATTCACTACAGGGGAGCCGAGAAGCTGAAGGTCCAGAGCTCAGCTCAGTCTGTTCAACTCCACTACCACTGCGATCCGTCTCAGCTGAGTGGCCAGTCCATCCTTTTCCCCTGCACTGAAGGCCTTACGGACCAGATACAGGTCGAGTACACCAAGCGCCTCCTGGACAGCATCCAGAGGGGCCTGCTGCTGGAGGTGTGCCCAACAGGAATCTATGGCCTCCGCCAAGACAAGTGCAATGTGTTTTTTAGCACCAGAGATCCTGCCGAGATTCAGAACCCAGAGCCCAAAAAGCTGCCCCAGAACTGCAAGGAACTTCTGTTTAGCTTCGAAAAGTACACCAAAGATCTCATGGATTTCCAAAGCCACCAGCGTGGATCGCCTGACTACACGATCTATTTGTGCTTCGGGGAGAAATTCCCTGATGGAAAGGCCCTGGAGAAAAAACTGATAATCGTAAAGGTTGTGCCTCTGATCTGCCGTGAGCTTCACAAGAGAGCGCAGATGGAGGGAGCATCATCTCTGCATAACGACAACATCAGCCTGCAGATCTCCTACAGCCTGTTCGAACTCATTGAGTCCACCTTCCTTCTACCCACATTTGACTGAAGTTTCACTATTTAAAACACTTCAAACAAGTTTCTCTCCATTCTTCTTAACACTTACTCTTACACAGTCTGTCTGGACTTAAGATTTTCAGATAATAAATGTGTCTTAAATGTAACTCTTCCCATAGTAGAACTAGTAAACATAGTAAAAATGGGACGGTTGTGAGACAGGAGTCTCTACCTTTCCTGCTTCAAGTTTAACCAGTTTCGATATAAGTTCTCAGTAAAACAACTTGAAGTAATTAGTTCTCCAAACTGGAAAACACCCCAAGCCCAGCTTCTGGCAGGACCAGTATGTTGACAATTTAAAGTTTACATCTTGTAATGTTCcattacattttttcttttaaagccaAGTCTTCCCACTCACTTCATTAATGAGGCAGTAACTGGGACGGTTGTGAGACAGGAGTCTCTACCTTTCCTGCTTCAAGTTTAACCAGTTTCGATATAAGTTCTCAGTAAAACAACTTGAAGTAATTAGTTCTCCAAACTGGAAAACACCCCAAGCCCCAGCTTCAGGCAGGACCAGTATGTTGACAATTTAAAGTTTACATCTTGTAATGTTCcattacattttttcttttaaagccaAGTCTTCCCACTCACTTCATTAATGAGGCAGTAACCTCATTTTGGTATTTATATCTTCTAATGAAGAATTCCCCTTGCTCTGCACTTGTAAGGGCTGATCTTGTAATACTTTCTTGtctgttattttaaattattctttGTTTAGCTTGGTATGTTGAAAACTGAAAGGTTGTATCTGTTTTTGTATGAACctgagaataaataaatatatacatatacaaaaacacactgtaA

Function

NR:

description
interferon regulatory factor 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228043.3 True 2214 mRNA 0.45 9 10065416 10073101
XM_007228044.3 False 2210 mRNA 0.45 9 10065417 10073101

Neighbor

gene id symbol gene type direction distance location
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding upstream 87592 9974224 ~ 9977824 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding upstream 107888 9910406 ~ 9957528 (+)
tbc1d2 tbc1d2 coding upstream 212359 9827287 ~ 9853057 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding upstream 265953 9791271 ~ 9799463 (+)
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding upstream 716989 9276546 ~ 9348427 (+)
hras hras,rash,LOC107562835,LOC103357265 coding downstream 112636 10185737 ~ 10206122 (+)
LOC103047796 NA coding downstream 134608 10207709 ~ 10212496 (+)
tsg101 tsg101,tsg101a coding downstream 139462 10212563 ~ 10221827 (+)
igsf22 igsf22 coding downstream 902620 10975721 ~ 11000591 (+)
spty2d1 spty2d1 coding downstream 956385 11029486 ~ 11034828 (+)
G72617 NA non-coding upstream 6530 10058685 ~ 10058886 (+)
G72615 NA non-coding upstream 7598 10057483 ~ 10057818 (+)
G72612 NA non-coding upstream 36570 10028483 ~ 10028846 (+)
G72606 NA non-coding upstream 86994 9977975 ~ 9978422 (+)
G72514 NA non-coding upstream 291817 9773199 ~ 9773599 (+)
LOC111193092 NA non-coding downstream 24158 10097259 ~ 10099145 (+)
G72752 NA non-coding downstream 724891 10797992 ~ 10798845 (+)
G72753 NA non-coding downstream 726445 10799546 ~ 10801772 (+)
G72766 NA non-coding downstream 935448 11008549 ~ 11015607 (+)
G72871 NA non-coding downstream 1111565 11184666 ~ 11184981 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 95374 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 915997 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 1029390 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 3179875 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 3526622 6525641 ~ 6538794 (+)
G72621 NA other downstream 5478 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 199818 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 2798383 12871484 ~ 12897931 (+)
G73533 NA other downstream 4575728 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 4818433 14891534 ~ 14921003 (+)

Expression


Co-expression Network