LOC103047796


Basic Information

Item Value
gene id LOC103047796
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10207709 ~ 10212496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228054.3
GAGTCAATAACTGCcgcagagaaaaacacacagcactTATTCTGCAGGAGAGATTTCCAGAGATTCAGTTTGTTTAATCTGTTTTGGATTGAAATCATGACGGTCACTAGTATAGGGTCTGTGAAGAAAGTGCTACCCAAGACATACCATCACAGGAAAAGGCTGCTATCAGAGGTCATGGTGGTCATGTCCCGTTACAAGTACCTAGAACCAGTAATGGACAGATTTGTTTTCAACAATGGCACCGCCAAGGATCTGCTAAGCCTGGTGGGGACAGTAACAGTgttgtaccaggGGAGACTTTATAACATCCCCCTGTGCCTCTGGCTGGATGAAAGCTTTCCCCGCACCGCTCCAATCTGCTTTGTGAAACCCACAAAAGAGATGATGATCGTTCCCAGCACTCACGTGAACAGCGACGGGCAGATCATGCTACCGTATCTGGAAGAATGGAGACATAGTCAGTGTGACCTTCACAGCCTAATTCAGGTGCTGATGTCCATCTTTGGTGAGGCACCTCCTCTGGTTATGCGGCCAGTTTCAGAAGAAGAGCCTATGAAACATTTTCACGCCTGCTCAGTGGAAAACAACTGTTCCCATATGACAGTGTGGAGAGAGGATGGATTACCTTTCCAAGGCAAAAATGAAACTATCTGCTAAATGTACAAACTGTAttcatattttgtatttaccTGTATATATTGATAgatgaatatgtttatataaaggtgttgtattatattttaaatacacaatATAATCGAATTTGATTGTCCTGTTTATTCTCAtgatgtgaaaataaataaactgtaataaaactttatgaaagagttaaaacctttttaaccttctttcaatgaaaaatgtcaatgtttattttaggtaTTTTTGGAGAATTTAATATTCTATATCAATTTATCAAGAAAATATGACacagtatgtttaaattatgtagtaaacataaTTCAACAAAACTAAAGATGCttattttcattggacagtgacgatatgctgTATTTATcgactgttttcttttttttaaactaaagtaTGTAACTTAATTGTCACATGTAATGCAACAGCCAGTGTTGAAGCTCCTAGTTATTAATGTACTCAATAGCtggaataaattaatgaatgctTTATATGCTTCTAACACaatataccttttttatttttttattttttcattattaaaggtTTGGctttcaaaata

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228054.3 True 1216 mRNA 0.36 6 10207709 10212496

Neighbor

gene id symbol gene type direction distance location
hras hras,rash,LOC107562835,LOC103357265 coding upstream 1587 10185737 ~ 10206122 (+)
irf7 NA coding upstream 134608 10065416 ~ 10073101 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding upstream 229885 9974224 ~ 9977824 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding upstream 250181 9910406 ~ 9957528 (+)
tbc1d2 tbc1d2 coding upstream 354652 9827287 ~ 9853057 (+)
tsg101 tsg101,tsg101a coding downstream 67 10212563 ~ 10221827 (+)
igsf22 igsf22 coding downstream 763225 10975721 ~ 11000591 (+)
spty2d1 spty2d1 coding downstream 816990 11029486 ~ 11034828 (+)
LOC103022764 uevld,LOC108275186 coding downstream 825004 11037500 ~ 11048398 (+)
th th,LOC108274586 coding downstream 893158 11105654 ~ 11116630 (+)
LOC111193092 NA non-coding upstream 108564 10097259 ~ 10099145 (+)
G72617 NA non-coding upstream 148823 10058685 ~ 10058886 (+)
G72615 NA non-coding upstream 149891 10057483 ~ 10057818 (+)
G72612 NA non-coding upstream 178863 10028483 ~ 10028846 (+)
G72606 NA non-coding upstream 229287 9977975 ~ 9978422 (+)
G72752 NA non-coding downstream 585496 10797992 ~ 10798845 (+)
G72753 NA non-coding downstream 587050 10799546 ~ 10801772 (+)
G72766 NA non-coding downstream 796053 11008549 ~ 11015607 (+)
G72871 NA non-coding downstream 972170 11184666 ~ 11184981 (+)
G72875 NA non-coding downstream 1010278 11222774 ~ 11223004 (+)
G72621 NA other upstream 125569 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 237667 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 1058290 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 1171683 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 3322168 6881587 ~ 6885541 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 60423 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 2658988 12871484 ~ 12897931 (+)
G73533 NA other downstream 4436333 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 4679038 14891534 ~ 14921003 (+)
svip svip other downstream 5359806 15572302 ~ 15577533 (+)

Expression


Co-expression Network