lrrc56


Basic Information

Item Value
gene id lrrc56
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10166327 ~ 10184846 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228056.3
AGCCACTCCCAGCGCTCGCGCTGTATCCAGGAAGAGACGATCCCGTTGTCAAGCAAACTTTTCCAGCCAGCAACTGCAGCAGCCCAGCTTAGCTGTTCACTCGTCCTCTGGGAAAAGATCCAAAATAGTTATACAGACTTTAACTCACATTTAATGGCGCTTTTAAGGTAGCTGCTGGCTGGATAAGATGGATCCTTTACAGAGTATCCTTCCAATTAGGCGTCCAGGTACTGCTCTGTCTTCAGTGACAGAGTTGGTTGGATCTGGACAGATAAACCCGTGTCCTGCCACTGCTGTGGACACAGACCCCCTGTCTGAATTTATACTTTCTCCAGAAAAGCTGAAAAGTTTGACTGGATCTGATGATCTAGACCAAGTCACAACCTTTGAGATGTGTGTGGACATTCGGGAGAATACCTTGGGCAACTTTGGTGTGTACTTGCCCAAGCTTGTGCAGCTGAAAATGAACAACAGTTTGATCTTATCTGTGAGGGATCTCGGAACCACTCTCTCACACATCCAAGTGCTCTCACTGGTTCGCTGTGGCCTGGCCGACTTGGACGGAATCTCCTCACTCCTATCTCTGAAGGAGTTGTATGTGGCCTACAACAATGTGTCAGACCTGAACCAGGTTGGTATGCTGGAGAACCTGGAGCTGCTGGATCTTGAGGGGAACAATGTGGATGACCTGTCCCAGGTGCAGTACCTGGGTCTCTGTGGGCAGCTTAGAACCCTGTCCTTGATGAGAAACCCAGTATGTACGTGCCCCCGTCCTGACAAGCCAGAGGTACCCGACTACAACTATAGAGCTGCTGTAAGGAAGCTGATTCCACAGCTACATGTCCTAGATGATGCTCCAGCGGAGGAGGTGGAGCTTCGCTGTTCCAGTACTCTGATGGAGGATGAGACTGTGCTCACAGAGTCTATTAAAGACAGTGCATCCATTACAGACACTGCCAGTGGCAGCTTAGAAGACGAAAGAGCTGCCTCTGTATGTGGCCTGTCCCGCCCCTGCTCTGCCCAACGCCCAGGCACAAGCCTCAGCTTCAGTAGCATCTCCAGTCGTCCTTCAACCGCCAGGCCTCTCTCGTCCTCCTCTGACTCCAGACCTGGCTCAGCTTCCTCTGATCCTGACACCCTGGAGCACGAGAGTGATCTAACACACGGGGTAGGAAGGATCCTGTTTTGTGGGAATCCTGTTCAAGCTGTCAGAGCTCGGCGGCAGAAAATCAAGcACCAAGTCACTAACTCCCACTCCAGACCATGTACTCAGCTGGGTACTTACGTTCCTGAGCACACGTATGATGTCGAAGAGACAAACAGTCAGGACCGCAGTGATGTCTTTGCAGAACTCAGAGCCTGGAGGGAAGAACATAGCAAACGTCTTTTGGCTCTTGAGAAAGAACGTCAGCCACAGATTATGAAAATTGTACATGGTAATAATGATGACACTGAAGataatgatgaaactgatgatgatgatgaaactgaagatgatgatgaaactgaagatgatgatgatgaaagaAGCCATACTCTcagtctcatcagcaacaaagAAGAGAAGTTATTAATGGGAGGACAATCTGCTGACCACAGATATATTGACCCACCAGATTGCTCCTTCCAGTCTCCTTCGTCTCCTTCAGAGCTGCCTGATGCAGGTGCTGTATCTCCAGAGGTGTCCAGACTCTCTTATGTATCAGACCACACCCAGTCTCCTTCTCCACCATCCAGAGACACGGCACCATCCACCAGCAGGAAGATAACGGAGATACGTGCCCGTAGACTACGAGTCAGTACCTCAGGTGTTGGTGCGCAGAAACCTACAGGAGAAATCCTTTTACCAAACAAATCATCAATCAGAAGAGATACAGTCTCTACGTCTGTGAGTGCTGAGACTATGAACATTCAATCTCTACCTCTACAACTCCTGCACAAGCCTCACAGACCAGACTCCAGCCCTGCAGTCCTCCCGCAGAGGGAACCTTGttcaggacttcctggaagATCCAGTCTGTCCATCAATGAGCAGGAGGAGATCATTTGCTCCATTACACCCCAGAGGCCAACACCCACACGCCCTCACACAGCCAGAGCCTCTCTTCAGAGACATGCTGGACATCGCACACTCCTGCCTGGCAGAGGAAGCCCACATCTGGATTAAGGCCTTTTGGGTCTGTTTAAACCTGGCATTTGTGTGCGTTTTGTATTCGGACAGGATCTGGTTTAACTTTGACCAGATTCTGTTTACATTTGTCACTAAAATGCACCTCCAGTGTGACCAGATAAGATCCGATCTTATTTTCCAGCAATAAAAATTCATCAACatggggtgccgagtggtccagcggtccaaaaccgctgccactatgaacagGAGGTTGCATgttcgaacccct

Function

NR:

description
leucine-rich repeat-containing protein 56-like isoform X3

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228056.3 True 2402 mRNA 0.50 13 10166327 10184846

Neighbor

gene id symbol gene type direction distance location
phrf1 NA coding downstream 72714 10073229 ~ 10093613 (-)
LOC103036760 LOC108442475,LOC108275030 coding downstream 200608 9958520 ~ 9965719 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding downstream 540817 9544938 ~ 9625510 (-)
mfsd7 mfsd7 coding downstream 889826 9252866 ~ 9276501 (-)
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 1408199 8735077 ~ 8758128 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding upstream 38272 10223118 ~ 10233197 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding upstream 446000 10630846 ~ 10717984 (-)
b4galnt4 b4galnt4,LOC108439245 coding upstream 540678 10725524 ~ 10965182 (-)
tmem86a tmem86a,LOC107707555,LOC107709947,LOC107688565 coding upstream 823775 11008621 ~ 11028650 (-)
LOC103038359 NA coding upstream 864851 11049697 ~ 11084679 (-)
G72633 NA non-coding downstream 175820 9990196 ~ 9990507 (-)
G72596 LOC107751334,LOC107746538,LOC107680923,LOC107551454 non-coding downstream 208801 9955081 ~ 9957526 (-)
G72526 smu1,LOC108442464,LOC107082371,LOC106604632,LOC102223743,LOC108275199,LOC108243958 non-coding downstream 366924 9788501 ~ 9799403 (-)
G72524 NA non-coding downstream 382506 9783320 ~ 9783821 (-)
G72508 NA non-coding downstream 415635 9750450 ~ 9750692 (-)
G72689 tsg101,tsg101a non-coding upstream 27734 10212580 ~ 10221634 (-)
G72802 NA non-coding upstream 383058 10567904 ~ 10625271 (-)
G72803 NA non-coding upstream 386318 10571164 ~ 10627025 (-)
G72806 NA non-coding upstream 444351 10629197 ~ 10629486 (-)
G72807 NA non-coding upstream 444736 10629582 ~ 10629824 (-)
LOC103046452 rassf7 other downstream 3843 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 112293 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 263434 9856399 ~ 9902893 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other downstream 341808 9801055 ~ 9824519 (-)
G72453 NA other downstream 940768 9188399 ~ 9225559 (-)
LOC111193093 NA other upstream 1039933 11224779 ~ 11225954 (-)
LOC111193052 NA other upstream 1336041 11520887 ~ 11545246 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 1863780 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 2363844 12548690 ~ 12564978 (-)
G73172 NA other upstream 2425988 12610834 ~ 12621356 (-)

Expression


Co-expression Network