LOC103024122 (LOC108439251,LOC100136550,LOC100304637,LOC107675272)


Basic Information

Item Value
gene id LOC103024122
gene name LOC108439251,LOC100136550,LOC100304637,LOC107675272
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11123179 ~ 11132277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228064.3
AACTTTTTGCCTGTCGCCTGATTTTTGGGACAGCttcacacacacgcgcacgcacgcacagagtaaccaacacatacacacaccacaacgCTCGAGCAGCATCTGGGAAACTACCTGCAACTTTCTTCTTGACCAAATACGACCGCAGTATcctgtgtgtgcgcgcgcgcgttcttgtttttttatcattattattttctacctatatatatttttctttttttggtattttgaaACAAACTTCCAACAGCACTGATatggaggaacagcagcagcagaagaagcagcagcaacACAGCTACCATTCTGTTTGCCACACCTGCTGGAGAACGGAGAGTGCCAGGAACAAGGTCAGAAAGATGTCCGCGTGCAGTCGGTGGCTGGTGTGCGCGCTGGCTCTGTCGCTGTGCGTCTTGGATATGGCTTCAGCCGAGACGTTATGTGGCGGAGAGCTGGTGGACGCGCTGCAGTTCGTGTGCGAGGACAGGGGCTTCTACTTCAGTAGACCAATAAGCAGAGCGAACAGTCGGCGTACTCAGAACCGCGGCATCGTGGAAGAGTGTTGTTTTCGGAGTTGTGACCTTCAGCTGTTGGAGCAGTACTGCGCCAAGCCCGCCAAGTCAGAGAGGGACGTGTCGGCCACTTCCCTTCAGGTCATATCCATGATGCCAGCATTAAAACCGGATGTCCCAAGAAAGCACGTGACCGTGAGATATTCCAAATACGACCAGTGGCAACGGAGGGCCGCCCAGAGGCTACGGAGGGGCATCCCAGCCATCTTGCGATCCAGGAAGTTCAGGCGGCAGGCGGAGAAGATCAAGGCCCAGGAGCAGGCCAACTTCCACAAGCCTCTCATCTCGCTTCCCAGCAAGCTCCCTCCAGTATGGCATCCCACAGAAGACTACGTCAGCCCCAAGTGAATCCAGGATAGTTTGCACAGAgttggaaaagagaaaaaaagactaGGGGATCATAGCTTTGTATCTGACGTCATTTCTGTGGCAGTCCTCTATATCCCTGCATCCCTCCCATCCCCCACACACATGTTCGCACTCTTCCAGTCTTTTACTCTTGCTGTTTCATTCACCACCACAAAAAGGCACATCACAAAcgagactgaaaaaaaaagaaaagaagatgaCGCTTTGGCTGACTGTAATCGTTTAGGTGGATCCTAAAAATAAGGAAGAGGAGCAAAGGAAGaaaagatgaagagagagatacGTGGCTTGCGAAAAAGGTCAAGAGGACACCCCTGCAAAAGTGGTTTTGTCGGTTTCGGAGGACATCAAAACTGCTAGcacgaacaaaaaaaaacaagcattccACAACTTCCTCCCGAGACAGAAGTATCTCTCAGCTAGACCTTATTCTTTTAGTTACTTTGCACCGCTAACTATAAAGGGACATCCACACTGTAAGGAATTGTTTTGTAAAAATTTAGATTCCTGTTCCAGCACCTTCTAATCACAAACAAAAAGCAGAGAAGAGTCTGCAAATTGCACATTGCCACGGATTACGTCAAAGTTCttgttaagtaaataaaaatggcaCTATTTTTTTATGGACAATGAACGTGTAGCTCAAAAAATGTCATGGTGCTAGCTTTGTGAACGGACTCAAAGAATAGGAGGTTGGAAAgcacgttttttttctttgaataaTTATTAAACTTTCCGTTTTAAGGAAAGTGTGACTTTtacaaggagaaaaaaagagcatATCGGCCGTGGCAGTGCGTGTAGAGGACGCCGCCGCATGCAGCTGTGTCTGAGTGATGCATGGGGTTAAATCATGCAGCAGTCACGCTGTGTGCCCCTGGTTCCACTGCTGTCACTGCGGTCAGTGGATGGGAGCAGTGTGGGGACAGTAAAGGGATGACGTAAAGGCCTGGACTTGGAGAGCTAGTCTCTGTTCTACCTTGGCTGCAAAAGCCCTTGCCTTGCACTGCAGGAAGTGGGAGTTAAGGACTTGGAATAAGTgggatgatttttttaatttttattttctgtgtgtCATTTCATGAAGATGTTtcaaggaaaaaggaaaaaaaagacctGTTCATTTTCTGGTACCGTGACATTCCTGTCGTTGCAAAATaggcattttttttgtcttttcttttcttgtctgttttttttttgtgatattttacaGTTCTGAAGGCACAAATATCAATTCAAAGGGAAAAAATCGCAATAATGTCAactaacctttatttttaatgtttatcaGTAGTATTCACATGCTTTTGCCTGAAAACAAAtacttgaatatatatataaatatattatataaaatatgaatatgaaatataaatatatatatctatatctatatataattaGTTTCCAGGGACATCATGTTATATTCTTTTAGTCTGAGCTGTATCTTGCGTAATGAGCCGCCaagcttttgttttgtttgtttaagtacAAATATGGGCACTGTATAaaggcattatttattttgttataaaaatatatatatgaaaaaaattggtccaaatacagtaatatacgtAGCACTGATGCTCAACTgatggattttattttatatgctcTCCTTTTCCCATTTTACTTGTAATGCTTGTTTTGTAGATGCTTTGTACcaaaaatatttctttctttttttttcctttctgttttgccacggagctatttaaaaaaaaaaatcaatattttaacaGCAGAAGTACCCTGGATTGCTTAGGCATGTCATGTCACAAAAAAATAGGCACATAATCTGAAGACTCTCCGTCTTTCTCCTCTCATGGCTTCTCTTGCATGGCTTTTTGATCTGCCAAATGGATTTCTGTTATTAAAATACTCAAGCTTGACTTTTATCACACCAAGTTCAATATGCAGTGATTGTACTCAGTTGTACTCAACAGACAATAATTTAAACCAGTTCATGTGGACTGGAAATGGAATCGGAGCTGGCGATCtgccttttgttttgttttttttgttttttttgaaaGTGGGGAGGGGGGTGTTTTTTGCAGTATGTATATATGAGTAAATCAGCGTAGGAGTTGTATAGGAGTTAAGCGTTTGTCACATGTATTGGATTTGAGTGgtgttaaagtaaaagtaacccGAGTCGTAAGCCAGTAGCTGTAATGAGGCGTAATGGGGGAAACGGTCTCTTTGCACCACGGGACAGCTTTGTAGTGGAGTCACAGATCAGTGTAAAGGGCAGCGTCTAGTAACACGGTTATCCTCCATGGCTCAGCAGCGATTGACAGGGGAAGTGTTCAGCCTGTAAGTGAGCACTGAAGGGCAGTGAGGTGATGCTTCCTCATCGCTGCTGAGGTCACTCAGAGGGGGTGCTTTATTATAATAATGGATACGTCATTGTCTGCCTCCCTCTgactctctgtctttcttcatCGCCCTACATCCTGCCTTGGCTGGAAACAGGTTCCTCCTTCACTCATCAAGGAATACCAATCTTACTTCATTGCTAAAGGGCTACCTAACTGAACCATCTTCGACGCAGTGTTATACTCAGGAAGAAACGGTTTATGAGGATCTCATCCTCACTCGAGACAGAGAGCAGAGGAACAGAGAGCCATTAGGAGCAATCCTGTGTTTTATTCCCCCACTCACTCCTCAACTCCTCGGATATTTCCCACGCTTAGACATGGAGAAAAATGGAGAATGAGCCAGTACTACTTTAACAGACCATATTACATCACTTAAGATCATGAAGCCACTACAGAATGACTACAGTCTACAGTATACCACTCTGCATTTACAGTCTTCATCAGTAATCTGTCTGGTTATCCATATCAGTTGTGTGATAAAGCagtgcaattattattattattattattattattattattacatcttCTGGAGACATAACAATCTTTTTCTACTTCCTGCTAGGACTGCAtccactctttttttattttgaacagGCTACTTTCTGTGTGAAtggtgtaaagaaaaaaaaaacgttctttGCGCTGAAATATGAAGGGATCCTTTGCCTGTCAATGCAACATATTAGTGTCAGTAGCCCACTCAGcctgtgtgtatttttattgatttaaccTCTGCACGCTAGAATGTCCGAAATGCACAATTCATGtactttcatttttaatatcaataaagaaaacattttatcGAATACA

Function

NR:

description
PREDICTED: insulin-like growth factor II isoform X2

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0005179 hormone activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228064.3 True 4147 mRNA 0.42 4 11123179 11132277

Neighbor

gene id symbol gene type direction distance location
th th,LOC108274586 coding upstream 6549 11105654 ~ 11116630 (+)
LOC103022764 uevld,LOC108275186 coding upstream 74781 11037500 ~ 11048398 (+)
spty2d1 spty2d1 coding upstream 88351 11029486 ~ 11034828 (+)
igsf22 igsf22 coding upstream 122588 10975721 ~ 11000591 (+)
tsg101 tsg101,tsg101a coding upstream 901352 10212563 ~ 10221827 (+)
LOC103028645 LOC108428835 coding downstream 431055 11563332 ~ 11634593 (+)
LOC103029705 mob2,LOC108411394,LOC108274974 coding downstream 533538 11665815 ~ 11733195 (+)
LOC103038976 LOC108428833 coding downstream 793710 11925987 ~ 11938380 (+)
myod1 myod1,myod coding downstream 807247 11939524 ~ 11941817 (+)
LOC103034044 NA coding downstream 823347 11955624 ~ 11963784 (+)
G72766 NA non-coding upstream 107572 11008549 ~ 11015607 (+)
G72753 NA non-coding upstream 321407 10799546 ~ 10801772 (+)
G72752 NA non-coding upstream 324334 10797992 ~ 10798845 (+)
LOC111193092 NA non-coding upstream 1024034 10097259 ~ 10099145 (+)
G72617 NA non-coding upstream 1064293 10058685 ~ 10058886 (+)
G72871 NA non-coding downstream 52389 11184666 ~ 11184981 (+)
G72875 NA non-coding downstream 90497 11222774 ~ 11223004 (+)
G72876 NA non-coding downstream 92517 11224794 ~ 11226186 (+)
G72882 NA non-coding downstream 388735 11521012 ~ 11522661 (+)
G72893 NA non-coding downstream 435300 11567577 ~ 11625496 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 496215 10272919 ~ 10626964 (+)
G72621 NA other upstream 1041039 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 1153137 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 1973760 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 2087153 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 1739207 12871484 ~ 12897931 (+)
G73533 NA other downstream 3516552 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 3759257 14891534 ~ 14921003 (+)
svip svip other downstream 4440025 15572302 ~ 15577533 (+)
G74169 NA other downstream 5154399 16286676 ~ 16288329 (+)

Expression


Co-expression Network