myod1 (myod1,myod)


Basic Information

Item Value
gene id myod1
gene name myod1,myod
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11939524 ~ 11941817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228102.3
TTTCGCCTCCTCAGCAACAAGTAGCTGCAGGCTGCACTGGGACAGGAGTTGGTGGAGCCCTACCTGCAACACTCactcattccctctctcttgTCTTTCACTCACTGCAGACaagagtgtgtgtttaaacaGGACAGAAACCTGACAGAAAGTGTCTGAGCGCATTGGAGGCTCTCTGGAGTGTTGGCTCAACTCCTACCTtattttacacacttaaaaaaagtttcatcaCTTTGGTTTTTTGGGGGgtcagaaaaaagagagatggagcTGTCGGATATCCCGTTCCCCATCCCGTCCGCGGACGACTTCTACGACGACCCGTGCTTCAACACCAACGACATGCATTTCTTCGAGGACCTTGACCCACGGCTCGTGCACGTGAGTCTGCTCAAACCGGACGAGCACGGCCACGCGGAGGACGAGCACGTGCGCGCGCCCAGTGGCCACCACCAGGCGGGCAGGTGTCTCCTGTGGGCGTGCAAGGCTTGCAAGAGGAAGACGACGAACGCGGACCGGCGGAAGGCCGCCACCATGCGGGAGAGGAGGCGCCTGAGCAAAGTGAACGACGCCTTCGAGACGCTGAAGCGATGCACGTCGGCCAACCCCAACCAGAGGCTGCCAAAGGTGGAGATCCTGAGAAACGCCATCAGCTACATCGAGTCCCTGCAAGCTCTGCTGCGCAGCCAGGAGGACTCCTACTACCCGGTCCTGGATCAGTACAGCGGGGACTCGGACGCGTCCAGCCCCAGGTCCAACTGCTCCGACGGCATGATGGATTTCAACGGCCTATCATGTCCATCTAGAAGAAGAAACAGCTATGACAGTTCCTACTTCAACGAGAGTCAAAACGTAGATGTGCGGAGCAGTAAATCCACAGTAGTGTCCAGTCTGGACTGTCTCTCCAGCATCGTGGAGCGAATTTCCACGGAAGCGCCCGCATGTCAGCCGCTCGCGACGCACGAGCCGTCGGActgcagcagcaccagcagcccGCGTTCTCCGCACGATGCGCCCGCGCTCAGCGAGACGGTACCGAGCACTCCCTCCCCCGGGAACGCCGTGTACCAAGTCctgtagaacacacacacagacatgcacacactcatacatacatacacacacgcgcgcgcggtGTACAGGAGCCTTCAGGACTGTGCTGTTCCTGTGCGGGAGAACAGAAGTGGGAGAACATAAATTTTTACCTTTATCCTTTCTTTCGTTCTCTTTTCTCACACTAtcttcattttaattcatttagtcTTTCCTggatctttatttttattttattttttctttcctttattttcctggtttctttttcctttatttcttcCTTCCAAACTTTTCTTTCTTCGTTCTTTCCTGTATTTCcacacttttctttttatttattgtcctTCTGTTTTTAGTCCGATCTTTTTTCACATGATATTCATTTaggtttttctttcattctcttcaCTCTTTCTTTGTACTTTTATACATTCTTTCTTcattattgtatttgtatttatttcttgttgttcggactttttctttctttctttctttttcttgtccTTTACTATTTTGTATCTTTTTATTCTATCTTTTTTctgtagaaaatataaaattccATGGTATCGATGGCTCTGCCGAAGTCAGTTTCTTAAAAccttttatttatatgattGTCAGCTGCAATATTGTGACCATATCTTCCCTTGTTGAACCTCTTCTTTCTGTCTCCTTCATCTTTTACGATTTCCTGATTGTTCATGTGAGAAAACACTTCATCTATGAGAAGTAGAGGACCAGttttgtatatgtgtatataagagCTGTTTTGTTAAAAGGAGAAGTGATCAAACTTTGTATTTAATGCTGCCTGTGTGAGGAGTTTGTTGTGTCCGacgtttatatttatacttcttCAGTGAGTGAATGTGGattaataaagaaatacttatttatacacaca
>XM_007228103.3
TTTCGCCTCCTCAGCAACAAGTAGCTGCAGGCTGCACTGGGACAGGAGTTGGTGGAGCCCTACCTGCAACACTCactcattccctctctcttgTCTTTCACTCACTGCAGACaagagtgtgtgtttaaacaGGACAGAAACCTGACAGAAAGTGTCTGAGCGCATTGGAGGCTCTCTGGAGTGTTGGCTCAACTCCTACCTtattttacacacttaaaaaaagtttcatcaCTTTGGTTTTTTGGGGGgtcagaaaaaagagagatggagcTGTCGGATATCCCGTTCCCCATCCCGTCCGCGGACGACTTCTACGACGACCCGTGCTTCAACACCAACGACATGCATTTCTTCGAGGACCTTGACCCACGGCTCGTGCACGTGAGTCTGCTCAAACCGGACGAGCACGGCCACGCGGAGGACGAGCACGTGCGCGCGCCCAGTGGCCACCACCAGGCGGGCAGGTGTCTCCTGTGGGCGTGCAAGGCTTGCAAGAGGAAGACGACGAACGCGGACCGGCGGAAGGCCGCCACCATGCGGGAGAGGAGGCGCCTGAGCAAAGTGAACGACGCCTTCGAGACGCTGAAGCGATGCACGTCGGCCAACCCCAACCAGAGGCTGCCAAAGGTGGAGATCCTGAGAAACGCCATCAGCTACATCGAGTCCCTGCAAGCTCTGCTGCGCAGCCAGGAGGACTCCTACTACCCGGTCCTGGATCAGTACAGCGGGGACTCGGACGCGTCCAGCCCCAGGTCCAACTGCTCCGACGGCATGATGGATTTCAACGGCCTATCATGTCCATCTAGAAGAAGAAACAGCTATGACAGTTCCTACTTCAACGAGAGTCAAAACGATGTGCGGAGCAGTAAATCCACAGTAGTGTCCAGTCTGGACTGTCTCTCCAGCATCGTGGAGCGAATTTCCACGGAAGCGCCCGCATGTCAGCCGCTCGCGACGCACGAGCCGTCGGActgcagcagcaccagcagcccGCGTTCTCCGCACGATGCGCCCGCGCTCAGCGAGACGGTACCGAGCACTCCCTCCCCCGGGAACGCCGTGTACCAAGTCctgtagaacacacacacagacatgcacacactcatacatacatacacacacgcgcgcgcggtGTACAGGAGCCTTCAGGACTGTGCTGTTCCTGTGCGGGAGAACAGAAGTGGGAGAACATAAATTTTTACCTTTATCCTTTCTTTCGTTCTCTTTTCTCACACTAtcttcattttaattcatttagtcTTTCCTggatctttatttttattttattttttctttcctttattttcctggtttctttttcctttatttcttcCTTCCAAACTTTTCTTTCTTCGTTCTTTCCTGTATTTCcacacttttctttttatttattgtcctTCTGTTTTTAGTCCGATCTTTTTTCACATGATATTCATTTaggtttttctttcattctcttcaCTCTTTCTTTGTACTTTTATACATTCTTTCTTcattattgtatttgtatttatttcttgttgttcggactttttctttctttctttctttttcttgtccTTTACTATTTTGTATCTTTTTATTCTATCTTTTTTctgtagaaaatataaaattccATGGTATCGATGGCTCTGCCGAAGTCAGTTTCTTAAAAccttttatttatatgattGTCAGCTGCAATATTGTGACCATATCTTCCCTTGTTGAACCTCTTCTTTCTGTCTCCTTCATCTTTTACGATTTCCTGATTGTTCATGTGAGAAAACACTTCATCTATGAGAAGTAGAGGACCAGttttgtatatgtgtatataagagCTGTTTTGTTAAAAGGAGAAGTGATCAAACTTTGTATTTAATGCTGCCTGTGTGAGGAGTTTGTTGTGTCCGacgtttatatttatacttcttCAGTGAGTGAATGTGGattaataaagaaatacttatttatacacaca

Function

symbol description
myod1 Predicted to enable DNA binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and promoter-specific chromatin binding activity. Acts upstream of or within muscle organ development and striated muscle cell development. Located in nucleus. Is expressed in several structures, including head; mesoderm; musculature system; presumptive mesoderm; and trunk. Orthologous to human MYOD1 (myogenic differentiation 1).

NR:

description
PREDICTED: myoblast determination protein 1

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0043282 pharyngeal muscle development biological_process
GO:0002074 extraocular skeletal muscle development biological_process
GO:0071392 cellular response to estradiol stimulus biological_process
GO:0043966 histone H3 acetylation biological_process
GO:0043967 histone H4 acetylation biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0031490 chromatin DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09064 MYOD1, MYF3; myogenic factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228102.3 True 1963 mRNA 0.47 3 11939524 11941817
XM_007228103.3 False 1960 mRNA 0.47 3 11939524 11941817

Neighbor

gene id symbol gene type direction distance location
LOC103038976 LOC108428833 coding upstream 1144 11925987 ~ 11938380 (+)
LOC103029705 mob2,LOC108411394,LOC108274974 coding upstream 206329 11665815 ~ 11733195 (+)
LOC103028645 LOC108428835 coding upstream 304931 11563332 ~ 11634593 (+)
LOC103024122 LOC108439251,LOC100136550,LOC100304637,LOC107675272 coding upstream 807247 11123179 ~ 11132277 (+)
th th,LOC108274586 coding upstream 822894 11105654 ~ 11116630 (+)
LOC103034044 NA coding downstream 13807 11955624 ~ 11963784 (+)
znf469 NA coding downstream 423548 12365365 ~ 12417357 (+)
LOC103039191 LOC108428816 coding downstream 516728 12458545 ~ 12485409 (+)
LOC103039298 NA coding downstream 548767 12490584 ~ 12547678 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 coding downstream 627020 12568837 ~ 12587543 (+)
G72946 NA non-coding upstream 121286 11812999 ~ 11818238 (+)
G72905 NA non-coding upstream 259702 11610470 ~ 11679822 (+)
G72893 NA non-coding upstream 314028 11567577 ~ 11625496 (+)
G72882 NA non-coding upstream 416863 11521012 ~ 11522661 (+)
G72876 NA non-coding upstream 713338 11224794 ~ 11226186 (+)
G72993 NA non-coding downstream 2160 11943977 ~ 11951765 (+)
G73001 NA non-coding downstream 36391 11978208 ~ 11978882 (+)
G72992 NA non-coding downstream 91266 12033083 ~ 12050540 (+)
G73029 NA non-coding downstream 183816 12125633 ~ 12126858 (+)
G73031 NA non-coding downstream 188745 12130562 ~ 12130798 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 1312560 10272919 ~ 10626964 (+)
G72621 NA other upstream 1857384 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 1969482 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 2790105 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 2903498 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 929667 12871484 ~ 12897931 (+)
G73533 NA other downstream 2707012 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 2949717 14891534 ~ 14921003 (+)
svip svip other downstream 3630485 15572302 ~ 15577533 (+)
G74169 NA other downstream 4344859 16286676 ~ 16288329 (+)

Expression


Co-expression Network