LOC103034366 (tnni2,LOC103034366,LOC108428827,LOC107742057)


Basic Information

Item Value
gene id LOC103034366
gene name tnni2,LOC103034366,LOC108428827,LOC107742057
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12033289 ~ 12036047 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228105.2
GGAATCCATTTCCATAAACAGGACTCCAGGGATGTGCTGAGCCATCAGAGGAGCCCTTATATATCCTATTTAATTTTTCCTCTGACTGGGGCTTGCCAGTCTTCCTTGTCCTTTTGCCAAGTGTGTTCTCCCCTCGTTCTCGTGTATAGggtGTGAACACAACAAACCGCCAAGATGTCGGAGAAAAAGATGACATCCAGTCGTCGGTACAACTTGAAGAGCTTGCTGCTCTCAATTGCTGCCAACTTGCTGGAGGCTGAATCCAAGCAGCTTGTGGTTGATAAAGAGAATTACATGGCTGAACACTGCCCACCCTTAGATCTGCCTTCATCTACACAGGAGCTGCAGgAATTCCTCAAGAAGCTCAACCAGAACATTGAAAAGATTGATGAGGACAGGTATGACCTGGAGGCCAAGGTTATCAAGACAGACAAGGAGATCGATGACCTGAAGATTAAAGTTCAGGACCTGAAGGGCAAGTTCAAGAAGCCAGTGCTGAGGAAGGTGCGCATGTCCGCCGATCAGATGCTTCAGGCTCTGCTGGGCTCCAAGCACAAGGTGGATCTGGATCTGAGAGCCAACCTGAAACAAGTGAAGAAGGAGGTCAAGGAAGAGACTGCAGAACAAGTTGGTGACTGGCGTAAGAACATTGAGGATAAGGCTGGCATGGACGGCAGAAAGAAGATGTTTGAGTCCGAGGCTTAAGATGGCATTTGTTTTCTGATTGAACTTAATTTTTCTCTGGCAGTAGTTCTGTAACCCCCATTCTGTTCCAATAAAAGTCCTTTCCCCCAACATTTTTCACA

Function

symbol description
tnni2 Enables troponin T binding activity. Contributes to actin binding activity. Involved in positive regulation of transcription, DNA-templated and skeletal muscle contraction. Located in nucleus. Part of troponin complex. Implicated in arthrogryposis multiplex congenita and distal arthrogryposis type 2B1.

NR:

description
troponin I, fast skeletal muscle-like

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0005861 troponin complex cellular_component

KEGG:

id description
K12043 TNNI2; troponin I, fast skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228105.2 True 806 mRNA 0.47 7 12033289 12036047

Neighbor

gene id symbol gene type direction distance location
LOC103031193 LOC108428829 coding downstream 37088 11957570 ~ 11996201 (-)
LOC103031503 tnnt3b,LOC108428830,LOC108275000 coding downstream 79500 11944425 ~ 11953789 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding downstream 198549 11805817 ~ 11834740 (-)
abcc8 abcc8 coding downstream 229254 11739962 ~ 11804035 (-)
LOC111193095 NA coding downstream 257150 11767509 ~ 11776139 (-)
LOC103035544 LOC107742058,LOC107675302,LOC107595230,LOC107758756,LOC107549283,LOC108275297,LOC107675455 coding upstream 628 12036675 ~ 12041062 (-)
LOC111193054 NA coding upstream 307428 12343475 ~ 12348986 (-)
LOC103038241 kras,rask,LOC105900436,LOC103038241,LOC107675271,LOC108428819,LOC108274959 coding upstream 409629 12445676 ~ 12456034 (-)
LOC103039697 NA coding upstream 449599 12485646 ~ 12489180 (-)
polg polg,LOC107557431 coding upstream 551192 12587239 ~ 12602241 (-)
G72974 NA non-coding downstream 298443 11734144 ~ 11734846 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding downstream 300140 11694678 ~ 11733149 (-)
G72881 NA non-coding downstream 801611 11231179 ~ 11231678 (-)
G72857 NA non-coding downstream 901016 11079088 ~ 11132273 (-)
G72847 NA non-coding downstream 995144 11037508 ~ 11038145 (-)
G73030 NA non-coding upstream 89489 12125536 ~ 12126823 (-)
G73098 NA non-coding upstream 158526 12194573 ~ 12196578 (-)
G73119 LOC108428815,LOC108428741 non-coding upstream 466816 12502863 ~ 12539230 (-)
G73125 NA non-coding upstream 473994 12510041 ~ 12510921 (-)
G73159 fanci,LOC107670230 non-coding upstream 537264 12573311 ~ 12574584 (-)
LOC111193052 NA other downstream 488043 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 807335 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 1870805 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 1979255 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 2130396 9856399 ~ 9902893 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 12579 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 512643 12548690 ~ 12564978 (-)
G73172 NA other upstream 574787 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 2506149 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 2673011 14709058 ~ 14797283 (-)

Expression


Co-expression Network