LOC103035544 (LOC107742058,LOC107675302,LOC107595230,LOC107758756,LOC107549283,LOC108275297,LOC107675455)


Basic Information

Item Value
gene id LOC103035544
gene name LOC107742058,LOC107675302,LOC107595230,LOC107758756,LOC107549283,LOC108275297,LOC107675455
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12036675 ~ 12041062 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228108.3
TGAGGCCAGTGTATCACTGCCAGTGGCAAGCCTCCCTGAACCATTCCTCCATCAAGCCAGTCCCACTGCCACATCTTCTCATATAGgGGGAAAACAAAGAAACCGTCAAGATGTCTGAaaaaaaaatgacctCCAGCCGGAGGCATCAtctcaagAGTTTGATGCTCGGCATAGCTAAGGGCTTGCTTGAGAAGGAGGCTGCTCAACTTGAGGTTGACCGTGCTGCCTACATGGCAGAGAACTGCCCTGACCTGTCCATGCCTGGCTCAACACAGGAGCTGCAGgAACTGTGCAAAAAACTGCATTCAAACATTGACAAGGTTGATGAGGAGAGATATGACCTGGAGGCCAAAGTGGCAAAGTCGGACAAAGAGatTGAGGATCTGAAGATTAAGGTCATTGACCTGAAGGGCAAGTTCAAGAAGCCAGCTCTGAGGAAGGTGCGCATGTCCGCCGATCAGATGCTTCAGGCTCTGCTGGGCTCCAAGCACAAGGTGTCTCTGGATCTGAGAGCCAACCTGAAACAAGTGAAGAAGGAGGTCAAGGAGGAGGCGGCAGATGTTGGTGACTGGCGTAAGAACATTGAGGACAAGGCCGGTATGGATGGCAGGAAGAAGATGTTTGAGGGCGAGGCCTAAATTTTTGGACATTTCTTTGTTTACTCCGGGCTCCCTGCGGGCTGTGTAGTGTCTCTCCCCTTTTTGCAATAGTTACATTGTTTATGCCGCTGCCAATGCCTAATTAGTTGCATTTGTTTTCTGCAGGATATATATTGTGAAAAAGAACTTTATATGATTGCAGAGCCACTACCATTAAATTATCTTAATGAAAACCATTA
>XM_015601020.2
TGGCAAGCCTCCCTGAACCATTCCTCCATCAAGCCAGTCCCACTGCCACATCTTCTCATATAGGTGAGGAAAAGGgGGGAAAACAAAGAAACCGTCAAGATGTCTGAaaaaaaaatgacctCCAGCCGGAGGCATCAtctcaagAGTTTGATGCTCGGCATAGCTAAGGGCTTGCTTGAGAAGGAGGCTGCTCAACTTGAGGTTGACCGTGCTGCCTACATGGCAGAGAACTGCCCTGACCTGTCCATGCCTGGCTCAACACAGGAGCTGCAGgAACTGTGCAAAAAACTGCATTCAAACATTGACAAGGTTGATGAGGAGAGATATGACCTGGAGGCCAAAGTGGCAAAGTCGGACAAAGAGatTGAGGATCTGAAGATTAAGGTCATTGACCTGAAGGGCAAGTTCAAGAAGCCAGCTCTGAGGAAGGTGCGCATGTCCGCCGATCAGATGCTTCAGGCTCTGCTGGGCTCCAAGCACAAGGTGTCTCTGGATCTGAGAGCCAACCTGAAACAAGTGAAGAAGGAGGTCAAGGAGGAGGCGGCAGATGTTGGTGACTGGCGTAAGAACATTGAGGACAAGGCCGGTATGGATGGCAGGAAGAAGATGTTTGAGGGCGAGGCCTAAATTTTTGGACATTTCTTTGTTTACTCCGGGCTCCCTGCGGGCTGTGTAGTGTCTCTCCCCTTTTTGCAATAGTTACATTGTTTATGCCGCTGCCAATGCCTAATTAGTTGCATTTGTTTTCTGCAGGATATATATTGTGAAAAAGAACTTTATATGATTGCAGAGCCACTACCATTAAATTATCTTAATGAAAACCATTA

Function

NR:

description
PREDICTED: troponin I, fast skeletal muscle-like

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0005861 troponin complex cellular_component

KEGG:

id description
K12043 TNNI2; troponin I, fast skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228108.3 True 838 mRNA 0.48 7 12036675 12041062
XM_015601020.2 False 827 mRNA 0.48 7 12036675 12041039

Neighbor

gene id symbol gene type direction distance location
LOC103034366 tnni2,LOC103034366,LOC108428827,LOC107742057 coding downstream 628 12033289 ~ 12036047 (-)
LOC103031193 LOC108428829 coding downstream 40474 11957570 ~ 11996201 (-)
LOC103031503 tnnt3b,LOC108428830,LOC108275000 coding downstream 82886 11944425 ~ 11953789 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding downstream 201935 11805817 ~ 11834740 (-)
abcc8 abcc8 coding downstream 232640 11739962 ~ 11804035 (-)
LOC111193054 NA coding upstream 302413 12343475 ~ 12348986 (-)
LOC103038241 kras,rask,LOC105900436,LOC103038241,LOC107675271,LOC108428819,LOC108274959 coding upstream 404614 12445676 ~ 12456034 (-)
LOC103039697 NA coding upstream 444584 12485646 ~ 12489180 (-)
polg polg,LOC107557431 coding upstream 546177 12587239 ~ 12602241 (-)
rhcg rhcg coding upstream 597809 12638871 ~ 12651916 (-)
G72974 NA non-coding downstream 301829 11734144 ~ 11734846 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding downstream 303526 11694678 ~ 11733149 (-)
G72881 NA non-coding downstream 804997 11231179 ~ 11231678 (-)
G72857 NA non-coding downstream 904402 11079088 ~ 11132273 (-)
G72847 NA non-coding downstream 998530 11037508 ~ 11038145 (-)
G73030 NA non-coding upstream 84474 12125536 ~ 12126823 (-)
G73098 NA non-coding upstream 153511 12194573 ~ 12196578 (-)
G73119 LOC108428815,LOC108428741 non-coding upstream 461801 12502863 ~ 12539230 (-)
G73125 NA non-coding upstream 468979 12510041 ~ 12510921 (-)
G73159 fanci,LOC107670230 non-coding upstream 532249 12573311 ~ 12574584 (-)
LOC111193052 NA other downstream 491429 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 810721 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 1874191 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 1982641 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 2133782 9856399 ~ 9902893 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 7564 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 507628 12548690 ~ 12564978 (-)
G73172 NA other upstream 569772 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 2501134 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 2667996 14709058 ~ 14797283 (-)

Expression


Co-expression Network