LOC103039697


Basic Information

Item Value
gene id LOC103039697
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12485646 ~ 12489180 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228123.3
GCGGCGCTGTGGTCGCGCTGTGCGGGAATGTGAAGACGACAGAAGTCGCGGAAGGTTTTAAAAGACGTTTTCTAGCTCATTGTAGTGTAACACGGATCTGTGCGcagaataaaaactaaacaatgaTCTGATCTGTGAAGGGCAGCGCCGAGCCGAGCTAAAGGTTGTGGTGTTTGTGGTGTGGATCCGTGGAGTcagggggaggaggaggtgtgtgtgtgctgtgggtAGAGAGAGAGCGCCTGAGCGACAGACGAGCTTTTGTTTATGTTGGTGTTGGAGATTATTATACTGTCTCGAGAGTCTGAAAATGGACCCACAGAGTGACTGTACACTGGTGACTGCTGTGTCCTGCCATGATATTTTTGACCTGCAAACTGGTCAGTCAGATTCCAGTCCACTAGCAAAAGGAACAGCTTTCGCTTTCATCAAGGCTGTGCAATCTGTCAATGAGAGACTGGTAAAGCTGAGCGAAAAGCAGACGTTGCTGTTTGAGGTGATCCTGCTTGGGAAAGATTGTGAAGAACAGGCCAAATCAAAGATATTTGACAGTGCAAAATACTACGATCTAGAAATCGGCAAGTTCTGCTTTTGCTCCAAAGAGAAATTTGAGAGAACACTGCAGGAAAACCATGTAAAGTTGTTCCTGTCATCAGACAGGGATGATGTCCACAGTGCCCTTAAAGCAGGTGTTCCTGCTGCTTTGCTATGCCAGCAGGCAGACCAGCAGGTCCAGAATCAGCTGAAGGTGCTCTTCTCAGGAGATCTCATCGGCCTTACAGAGGACTCCACAGAGTATCTTAAGGATCTGGGGTTCAATGACGTTCAGATCCACAACTTCAAAGCAGCAAAGGGCCGCATTCAAGAATTTGCCATGCTGATCGGTGAAATGAGGAGGAGGTTTGGATGTGAGGACAGCCCTCTTCACACCATCCTCATGACAGTGTGGGGTTCCAGAGATATCTGTGCCACCGCTCTGAAGACCCTCCGAGCCTGGGGCCTTGATGTGGATGAAGCCTTCTGCCTGGCCGGAGCCCCCTGCACCCCTATCCTGACTGTATTACAGCCCCACATACTTTGGGATGATGGACTGCACAATTTAAAGGAAACATGACTAAGTATTTGCCTTTTTGGTTTAACCTACCAGTGCTCTGTTTTGAACTCTGTTTTGAATGTATAAAGATTTTTGGAAGACATCTgggttaatttgattttattgttgAAATACAgtgcaataaaagaaatagatttataaacaa

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228123.3 True 1259 mRNA 0.47 6 12485646 12489180

Neighbor

gene id symbol gene type direction distance location
LOC103038241 kras,rask,LOC105900436,LOC103038241,LOC107675271,LOC108428819,LOC108274959 coding downstream 29612 12445676 ~ 12456034 (-)
LOC111193054 NA coding downstream 136660 12343475 ~ 12348986 (-)
LOC103035544 LOC107742058,LOC107675302,LOC107595230,LOC107758756,LOC107549283,LOC108275297,LOC107675455 coding downstream 444584 12036675 ~ 12041062 (-)
LOC103034366 tnni2,LOC103034366,LOC108428827,LOC107742057 coding downstream 449599 12033289 ~ 12036047 (-)
LOC103031193 LOC108428829 coding downstream 489445 11957570 ~ 11996201 (-)
polg polg,LOC107557431 coding upstream 98059 12587239 ~ 12602241 (-)
rhcg rhcg coding upstream 149691 12638871 ~ 12651916 (-)
gdpgp1 NA coding upstream 169713 12658893 ~ 12661807 (-)
unc45a unc45a coding upstream 173561 12662741 ~ 12674522 (-)
LOC103043208 furin,furinb,LOC107581806,LOC107720773,LOC107750721 coding upstream 233097 12722277 ~ 12871382 (-)
G73098 NA non-coding downstream 289068 12194573 ~ 12196578 (-)
G73030 NA non-coding downstream 358823 12125536 ~ 12126823 (-)
G72974 NA non-coding downstream 750800 11734144 ~ 11734846 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding downstream 752497 11694678 ~ 11733149 (-)
G72881 NA non-coding downstream 1253968 11231179 ~ 11231678 (-)
G73119 LOC108428815,LOC108428741 non-coding upstream 13683 12502863 ~ 12539230 (-)
G73125 NA non-coding upstream 20861 12510041 ~ 12510921 (-)
G73159 fanci,LOC107670230 non-coding upstream 84131 12573311 ~ 12574584 (-)
G73162 fanci non-coding upstream 89678 12578858 ~ 12582454 (-)
G73173 NA non-coding upstream 124426 12613606 ~ 12620513 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 434157 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 940400 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 1259692 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 2323162 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 2431612 10051952 ~ 10054034 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 59510 12548690 ~ 12564978 (-)
G73172 NA other upstream 121654 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 2053016 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 2219878 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 2634634 15123814 ~ 15214284 (-)

Expression


Co-expression Network