LOC103044030 (LOC103044030,LOC108428802,LOC108428756)


Basic Information

Item Value
gene id LOC103044030
gene name LOC103044030,LOC108428802,LOC108428756
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12897785 ~ 12909061 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228139.3
CGGGGCGGTTTGATCTCTAGATTTTACTCAGTTCTCACGGCTCGCTGTTGTTAGAGTGAGACAAACTTAGACTAAGAAAGTCTgaagtacatattttatttttcaacatGTCTAGTTATGACTGATATTATAATGATCATATAGAAAACAAGTGATCTGAGACTTCAGAAGGCCAGTGTGGGGTCCCTGTGCtcatttttattcagattttgaCCCGTCTGAACATCCCACTCGCTGCAGCCCACCTGTTTATAAATGTCAAAACAAGTCAGAGTTTAGGCTTTACTAAAAGAGTTACTACAGTATGAGCTGAATCAGTACAGTTTCACTCTAAAAACCTCAGTCTGAGTCAGGTGGGGTTCTGGGGGAATTTAACcacactgtttgtgtgttttcagaGTGGGGGAGTTTCCACCCACTGCAGGTCTCCACAGTAGGAGGGAAATCTCCGGTGTCGtattgctctgtgtgtgtgtgtgtgtgagggggaaATGAaagctaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcataaaTGTTCGTCACCTTCTGTTTCACTCTCACTGTATTTCATGCTTGTGTGTGATCGTTGTCAGATCGCTCTATTCTGTGTGTAGTGTAACCTGCCTGGGCTATCACAACACTTACACGCAACAGTTTACTCCAACGTGATTCACCTTGAGGTAAGACAAACTTTATAtatcttttgttgttttttttttttttagaggaatGCAAGAGACAGACCTATCTTCATATCTGGTCCTTGATTCCAGTGTAGACTCCTGGACATAGTAATCCTATCCTACAGTAGATGTAACTCTTTGCTACCAATCGAttacattaaacattattttaacttCTAGTGAGAATAAATAATCAgcataaaaagtaatctaccttctgaattCGACAGTAGTAGtgtcaccaggctctgtaagGTGAGTGGATTACAGGAAGAACTTGCGATAAAACTTTGcgataaaaatacatttacgtgTTGGTTTTCAGATTAATCATGCTTGTCATCGCATTAACATTAACAGCTCTGATAGAACCCCATATCTAATAAAGTGTGAGGAACCTTTACACATCTCcaaccattttaaaaatcattactTTAGATAAGATAAGATCAAATAAGATAAAACTATATTGATCCCCCAAGGGGGAAATGAACTTGTTACAGCAGCAGGACCAAATCAAACTCAAAGTGCATACCCAGtaactaaaaaaagtaaattttattttaataaaaagacaaaGGGCAAATTGTGCAAGCAGAGGGAAACATACCAATAActaacataatttaaaacagacaacagcaatctgaataataatatacataagaACCAAgtggaaaatataaaattaaatgtattactgTAGGCTATTATTGTACAGTCTCACTGCTGATGGGAGAAAGGACCACAAGGAAGGAACCACAATTGGCTGAAGTAACTATTTGTTGCACCTTTATTTGGAAAACGTCATGTTGGATATTCCCCCATTCTCATTTTACCGTGTGTTTGGATTGTACTGTGCTGTACTGGGCACTGTAATCCTGATTATTAGAAGGGATTATTTAGCAAGTTTAACGATTTATGCAAATGTTTCACCTTTCTCACATATATTCCTACTTATCTCTCTTTCCTCTGTTTTAACTTGTTTCTATTCAGAAGAAAGAGTGATGAAAGGACCAGAGCTAAAGGATTCCACAGGCCGCTTTCGATTTGCTCAGTCATGTCTGGGCCTGGCGGGCTGCTTGTGTATCAGCTATGCTGTTTGGACGCCTCATTGGCTGGATGAGAGGGGCCTGTGGGTGAACGGGAACGAGTCGAGTCCAGACGACAGCTGGACACAGGGACAGGGCATTGAAGGTCTGGGGGCTCAGAGGGTGTTTTCTGCTCTATCGTTCATCATGGCTGTGAGCTCGGGAGTTCTGTGCCTGGTCTTCGCTTTCTGCTGGACGTCCCGGACCGTGCGCTCTTATTCCAACACACGCTCTCTACTGATGGCAGGCCAGGCACTCTACCCCACCATGCTGCTACTCATCACACTGGTGCCTACTGGGTTCTTCTTTCTTCTCAGCTGGGCACTCTTCACCAATCAGCACATCGCTGAAATCAGAGTCGACATCACGCGCCTGGGGTTCTCCTATTGGACGGGCATGGTGGGCTGGGCTTTGCTGTTAGCTGTGCTGCCGGTGGTGTTCCTGGTGGAGCAGTTTGTGGTGCCGGACGTGCTGCCGGAGCTGATGAGGCAGGCCGAGACGTGGTGGAAGGCCCCTGAGGTGGCTTACGCTCGCTCGTTTAGCGAGAGCTTCTACAACCACAGGGGGCCGAAACTTGACAAGGAGTTCAATAGGTACCTGTCAGTGCCCTGAGAAGGAGTGTAGCGGCACAGGCCGTGTGTCAAATCCTGCTATTGACTCAATACCTGCACCTACTGCTCCTAACAGCCGAACATAAGGCCTGAGCTCTGGTGGAAGGCTTGCAGAAGCTCGGAAGGTCGCGGATGTGGATACTGCACTTTAGCCGAGAGCTGTTGAGGCCTGCCAGAGCCTGATGAGCAAAGGAATGGCCTTGATTTGGGCCTATGAACTGATATTAAAGCCTGCTGAAAAAATACTAAATGTTTCCCactttcagaaagctgtgtaaacaCTACCTGCATAATGACAAGACTACTGTTTACTGTTACTGATGTACACTGGATCACTTTCAGGCTGCATTTAGAATTTAATGCAGtacttatttagattttatgcaGAACAATATGACAACATCTTAATACAATTGTAGACTAAGGAATGGAGTGAACAAAATTCATGTCAGGCAGAGGACGATCATCATGTATTCATGTTGTAACAGCTCCCTCGTGTGGTTATGCCATGTTACTACATTGTTCAAGTTACTACTCGGTATTACAAGTCAAGGTGCTTGTAGTCACATATCTCATATCTGATCAGCCCAGGTTGAGCTTGTTTTTGTTTGGCATGTTGTTgtcattacaaataaataaaaaggtaaataaataaataaccaat
>XM_007228140.3
gtctttaaaatgtttaattttctcATACCTGCAGATACTCTGGAGATGCACAGTAGCGCAGCGTGAACAGGAAGTAAGAGTGAGCGTGCAGGCTTTGCTTTGAGCCCACTGGGGTGGCGGAGTGACGAGTGGGCTCCACTTTCCTGTAccctggtcccttgatttccaaatgaaatgtaaaatttactgatgatcagtgatggtttggagagacatatcATCAGCGGGTGTTGATcaactgtgttatatcaagttcaagTGTAACCTGCCTGGGCTATCACAACACTTACACGCAACAGTTTACTCCAACGTGATTCACCTTGAGAAGAAAGAGTGATGAAAGGACCAGAGCTAAAGGATTCCACAGGCCGCTTTCGATTTGCTCAGTCATGTCTGGGCCTGGCGGGCTGCTTGTGTATCAGCTATGCTGTTTGGACGCCTCATTGGCTGGATGAGAGGGGCCTGTGGGTGAACGGGAACGAGTCGAGTCCAGACGACAGCTGGACACAGGGACAGGGCATTGAAGGTCTGGGGGCTCAGAGGGTGTTTTCTGCTCTATCGTTCATCATGGCTGTGAGCTCGGGAGTTCTGTGCCTGGTCTTCGCTTTCTGCTGGACGTCCCGGACCGTGCGCTCTTATTCCAACACACGCTCTCTACTGATGGCAGGCCAGGCACTCTACCCCACCATGCTGCTACTCATCACACTGGTGCCTACTGGGTTCTTCTTTCTTCTCAGCTGGGCACTCTTCACCAATCAGCACATCGCTGAAATCAGAGTCGACATCACGCGCCTGGGGTTCTCCTATTGGACGGGCATGGTGGGCTGGGCTTTGCTGTTAGCTGTGCTGCCGGTGGTGTTCCTGGTGGAGCAGTTTGTGGTGCCGGACGTGCTGCCGGAGCTGATGAGGCAGGCCGAGACGTGGTGGAAGGCCCCTGAGGTGGCTTACGCTCGCTCGTTTAGCGAGAGCTTCTACAACCACAGGGGGCCGAAACTTGACAAGGAGTTCAATAGGTACCTGTCAGTGCCCTGAGAAGGAGTGTAGCGGCACAGGCCGTGTGTCAAATCCTGCTATTGACTCAATACCTGCACCTACTGCTCCTAACAGCCGAACATAAGGCCTGAGCTCTGGTGGAAGGCTTGCAGAAGCTCGGAAGGTCGCGGATGTGGATACTGCACTTTAGCCGAGAGCTGTTGAGGCCTGCCAGAGCCTGATGAGCAAAGGAATGGCCTTGATTTGGGCCTATGAACTGATATTAAAGCCTGCTGAAAAAATACTAAATGTTTCCCactttcagaaagctgtgtaaacaCTACCTGCATAATGACAAGACTACTGTTTACTGTTACTGATGTACACTGGATCACTTTCAGGCTGCATTTAGAATTTAATGCAGtacttatttagattttatgcaGAACAATATGACAACATCTTAATACAATTGTAGACTAAGGAATGGAGTGAACAAAATTCATGTCAGGCAGAGGACGATCATCATGTATTCATGTTGTAACAGCTCCCTCGTGTGGTTATGCCATGTTACTACATTGTTCAAGTTACTACTCGGTATTACAAGTCAAGGTGCTTGTAGTCACATATCTCATATCTGATCAGCCCAGGTTGAGCTTGTTTTTGTTTGGCATGTTGTTgtcattacaaataaataaaaaggtaaataaataaataaccaat
>XM_022672160.1
taataaatttgccaaaaacattaacaaactTTTGGGCTACATTTTTGCAAGAGCTAATTAATATTTTAGGTTCTTTGCTTGAATGTAAAGATCTTGTAAAAACCTGTTTTGATAAAGAACTATTTACAAAATAGCTTTTCAAAgattgacaatattttattatattaatattataaaaaatatactgtatatctctaaGGAAAGTGGATACCTACTTAGAGACACATTGATGAGCaatgaataatgtatttataaagcaatatttGGATATTTATTACTAGCGCATTGTATTGCCTCTCCACTCTTCTTCCAGAccctggtcccttgatttccaaatgaaatgtaaaatttactgatgatcagtgatggtttggagagacatatcATCAGCGGGTGTTGATcaactgtgttatatcaagttcaagATCGCTCTATTCTGTGTGTAGTGTAACCTGCCTGGGCTATCACAACACTTACACGCAACAGTTTACTCCAACGTGATTCACCTTGAGGTAAGACAAACTTTATAtatcttttgttgttttttttttttttagaggaatGCAAGAGACAGACCTATCTTCATATCTGGTCCTTGATTCCAGTGTAGACTCCTGGACATAGTAATCCTATCCTACAGTAGATGTAACTCTTTGCTACCAATCGAttacattaaacattattttaacttCTAGTGAGAATAAATAATCAgcataaaaagtaatctaccttctgaattCGACAGTAGTAGtgtcaccaggctctgtaagGTGAGTGGATTACAGGAAGAACTTGCGATAAAACTTTGcgataaaaatacatttacgtgTTGGTTTTCAGATTAATCATGCTTGTCATCGCATTAACATTAACAGCTCTGATAGAACCCCATATCTAATAAAGTGTGAGGAACCTTTACACATCTCcaaccattttaaaaatcattactTTAGATAAGATAAGATCAAATAAGATAAAACTATATTGATCCCCCAAGGGGGAAATGAACTTGTTACAGCAGCAGGACCAAATCAAACTCAAAGTGCATACCCAGtaactaaaaaaagtaaattttattttaataaaaagacaaaGGGCAAATTGTGCAAGCAGAGGGAAACATACCAATAActaacataatttaaaacagacaacagcaatctgaataataatatacataagaACCAAgtggaaaatataaaattaaatgtattactgTAGGCTATTATTGTACAGTCTCACTGCTGATGGGAGAAAGGACCACAAGGAAGGAACCACAATTGGCTGAAGTAACTATTTGTTGCACCTTTATTTGGAAAACGTCATGTTGGATATTCCCCCATTCTCATTTTACCGTGTGTTTGGATTGTACTGTGCTGTACTGGGCACTGTAATCCTGATTATTAGAAGGGATTATTTAGCAAGTTTAACGATTTATGCAAATGTTTCACCTTTCTCACATATATTCCTACTTATCTCTCTTTCCTCTGTTTTAACTTGTTTCTATTCAGAAGAAAGAGTGATGAAAGGACCAGAGCTAAAGGATTCCACAGGCCGCTTTCGATTTGCTCAGTCATGTCTGGGCCTGGCGGGCTGCTTGTGTATCAGCTATGCTGTTTGGACGCCTCATTGGCTGGATGAGAGGGGCCTGTGGGTGAACGGGAACGAGTCGAGTCCAGACGACAGCTGGACACAGGGACAGGGCATTGAAGGTCTGGGGGCTCAGAGGGTGTTTTCTGCTCTATCGTTCATCATGGCTGTGAGCTCGGGAGTTCTGTGCCTGGTCTTCGCTTTCTGCTGGACGTCCCGGACCGTGCGCTCTTATTCCAACACACGCTCTCTACTGATGGCAGGCCAGGCACTCTACCCCACCATGCTGCTACTCATCACACTGGTGCCTACTGGGTTCTTCTTTCTTCTCAGCTGGGCACTCTTCACCAATCAGCACATCGCTGAAATCAGAGTCGACATCACGCGCCTGGGGTTCTCCTATTGGACGGGCATGGTGGGCTGGGCTTTGCTGTTAGCTGTGCTGCCGGTGGTGTTCCTGGTGGAGCAGTTTGTGGTGCCGGACGTGCTGCCGGAGCTGATGAGGCAGGCCGAGACGTGGTGGAAGGCCCCTGAGGTGGCTTACGCTCGCTCGTTTAGCGAGAGCTTCTACAACCACAGGGGGCCGAAACTTGACAAGGAGTTCAATAGGTACCTGTCAGTGCCCTGAGAAGGAGTGTAGCGGCACAGGCCGTGTGTCAAATCCTGCTATTGACTCAATACCTGCACCTACTGCTCCTAACAGCCGAACATAAGGCCTGAGCTCTGGTGGAAGGCTTGCAGAAGCTCGGAAGGTCGCGGATGTGGATACTGCACTTTAGCCGAGAGCTGTTGAGGCCTGCCAGAGCCTGATGAGCAAAGGAATGGCCTTGATTTGGGCCTATGAACTGATATTAAAGCCTGCTGAAAAAATACTAAATGTTTCCCactttcagaaagctgtgtaaacaCTACCTGCATAATGACAAGACTACTGTTTACTGTTACTGATGTACACTGGATCACTTTCAGGCTGCATTTAGAATTTAATGCAGtacttatttagattttatgcaGAACAATATGACAACATCTTAATACAATTGTAGACTAAGGAATGGAGTGAACAAAATTCATGTCAGGCAGAGGACGATCATCATGTATTCATGTTGTAACAGCTCCCTCGTGTGGTTATGCCATGTTACTACATTGTTCAAGTTACTACTCGGTATTACAAGTCAAGGTGCTTGTAGTCACATATCTCATATCTGATCAGCCCAGGTTGAGCTTGTTTTTGTTTGGCATGTTGTTgtcattacaaataaataaaaaggtaaataaataaataaccaat

Function

NR:

description
uncharacterized protein LOC103044030 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228139.3 True 3055 mRNA 0.43 3 12901430 12909061
XM_007228140.3 False 1695 mRNA 0.49 6 12897785 12909061
XM_022672160.1 False 2881 mRNA 0.41 4 12900385 12909061

Neighbor

gene id symbol gene type direction distance location
man2a2 man2a2,LOC107750719,LOC107720774,LOC107670215 coding upstream 182127 12680106 ~ 12715658 (+)
trnar-ucg_4 NA coding upstream 294361 12603352 ~ 12603424 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 coding upstream 310242 12568837 ~ 12587543 (+)
LOC103039298 NA coding upstream 350107 12490584 ~ 12547678 (+)
LOC103039191 LOC108428816 coding upstream 412376 12458545 ~ 12485409 (+)
rag1 rag1,LOC107750737,LOC107670202 coding downstream 25391 12934452 ~ 12942962 (+)
ehf ehf coding downstream 753748 13662809 ~ 13677076 (+)
pdhx pdhx coding downstream 785367 13694428 ~ 13765050 (+)
cd44 LOC106561308,LOC106573350 coding downstream 885352 13794413 ~ 13828422 (+)
fjx1 NA coding downstream 1099571 14008632 ~ 14011720 (+)
G73191 NA non-coding upstream 221437 12674986 ~ 12676348 (+)
G73189 unc45a non-coding upstream 228056 12663967 ~ 12669729 (+)
G73177 NA non-coding upstream 255963 12639245 ~ 12641822 (+)
G73146 fbxo31 non-coding upstream 332993 12564133 ~ 12564792 (+)
G73091 NA non-coding upstream 339933 12557634 ~ 12557852 (+)
G73214 NA non-coding downstream 38585 12947646 ~ 12952320 (+)
G73288 NA non-coding downstream 188680 13097741 ~ 13098590 (+)
G73292 NA non-coding downstream 248708 13157769 ~ 13158679 (+)
G73298 NA non-coding downstream 316610 13225671 ~ 13225955 (+)
G73301 NA non-coding downstream 328899 13237960 ~ 13238212 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 2270821 10272919 ~ 10626964 (+)
G72621 NA other upstream 2815645 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 2927743 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 3748366 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 3861759 8869128 ~ 9036026 (+)
G73533 NA other downstream 1739768 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 1982473 14891534 ~ 14921003 (+)
svip svip other downstream 2663241 15572302 ~ 15577533 (+)
G74169 NA other downstream 3377615 16286676 ~ 16288329 (+)
G74649 NA other downstream 5545790 18454851 ~ 18455197 (+)

Expression


Co-expression Network