ehf (ehf)


Basic Information

Item Value
gene id ehf
gene name ehf
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13662809 ~ 13677076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228150.3
GATTCTTGAGAGCCAAAGTCACTCCAAAACACACGTTCAGGACACCTTACATCTCGCCAGACTCCACAGCACTGGGCCTGGACCTTACTCAGCATCTCTGTGACGTCCCTGACCGCACCTGTAGCTCTGGACCATGGTCCTTCATAGCGGCTGCAGCATGAGTGCCAGTACCATCCCTGCCAGTGTGAGTGCTGAGAACCAGCTGCCTGCCTCCTGGAGCCCCCACTACAACTGCCCAGATGTTTCCATGATGACGTCTGGCTACGCTGGACGACTATGGTCTCAGGACCTCCATCCACAGTACTGGTCCAAATATCAAGTGTGGGAGTGGCTTCAGCAGATGCTGGACATGCACCAGATAGATGCCACAGCCATACCCTTCAATAACTTTGATCTGGATGGGAGGCAGCTGTGTAGCATGACCTATCAGGACTTCACCCGCCTGACTGGATCCTTCGGGCCTATCCTCTACCAGAGTCTGACTGACCTCAGTCAGTCCAAGTGGACCGGTCAGTATGGCTCTTCAGCAGATATGTTCACATCAGGGGATATTAAAACAGAATTAGATGcaGATCTTCCTTGCACAATCTTGTCTTTCAAGGAGGAGCCCAGCTTTTACGCCACTTCAGAGCTTTTTGACATTAAAACCCCATTTCAACCGTCTACCATGATGACCTCTCCAGCCCCCTCAAGTCCCGACACCAAAAGGTCCCACAGTCGTTCCAACCAAGTCAAAAaacacaaCCCTCGTGGGACCCATCTGTGGGAGTTCATACGCGACATCTTGTTGAACCCAGAGAGGAACCCAGGCCTCATTAAGTGGGAGGACAGGTCCGAGGGGGTGTTTCGCTTTCTAAAGTCGGAGGCAGTAGCACAGCTCTGGGGCAAAAAGAAGAacaacagcagcatgacctacgaGAAGCTCAGTCGAGCGATGAGGTATTACTACAAACGGGAGATTCTAGAGCGTGTAGACGGGCGCAGGCTGGTCTACAAGTTCGGAAGGAATGCTCGTGGTTGGAGAGAAACTGAGAAGTGA
>XM_022672162.1
ATGGTCCTTCATAGCGGCTGCAGCATGAGTGCCAGTACCATCCCTGCCAGTGTGAGTGCTGAGAACCAGCTGCCTGCCTCCTGGAGCCCCCACTACAACTGCCCAGATGTTTCCATGATGACGTCTGGCTACGCTGGACGACTATGGTCTCAGGACCTCCATCCACAGTACTGGTCCAAATATCAAGTGTGGGAGTGGCTTCAGCAGATGCTGGACATGCACCAGATAGATGCCACAGCCATACCCTTCAATAACTTTGATCTGGATGGGAGGCAGCTGTGTAGCATGACCTATCAGGACTTCACCCGCCTGACTGGATCCTTCGGGCCTATCCTCTACCAGAGTCTGACTGACCTCAGTCAGTCCAAGTGGACCGGTCAGTATGGCTCTTCAGCAGATATGTTCACATCAGGGGATATTAAAACAGAATTAGATGcaGATCTTCCTTGCACAATCTTGTCTTTCAAGGAGGAGCCCAGCTTTTACGCCACTTCAGAGCTTTTTGACATTAAAACCCCATTTCAACCGTCTACCATGATGACCTCTCCAGCCCCCTCAAGTCCCGACACCAAAAGGTCCCACAGTCGTTCCAACCAAGTCAAAAaacacaaCCCTCGTGGGACCCATCTGTGGGAGTTCATACGCGACATCTTGTTGAACCCAGAGAGGAACCCAGGCCTCATTAAGTGGGAGGACAGGTCCGAGGGGGTGTTTCGCTTTCTAAAGTCGGAGGCAGTAGCACAGCTCTGGGGCAAAAAGAAGAacaacagcagcatgacctacgaGAAGCTCAGTCGAGCGATGAGGTATTACTACAAACGGGAGATTCTAGAGCGTGTAGACGGGCGCAGGCTGGTCTACAAGTTCGGAAGGAATGCTCGTGGTTGGAGAGAAACTGAGAAGTGAAGGAGTAAGAGCTGAAGATGAATGTTTGAAAATGTGAGAATCTGTGAAGACTTATTTATAGCATTATGgccattacaaaaaaaacgtaTGGCCTtcatcagctgtttttttttttttgatgttatCTTTGCTTTTTATTTGTTCTATATCTGCTTCCAAAAGGCTGGTATGATGCACTGACCTCACTGAAGTTTGAACGATATTGTTGTTTACctgaaaatagcttttttttttt
>XM_022672163.1
ATGGTCCTTCATAGCGGCTGCAGCATGAGTGCCAGTACCATCCCTGCCAGTGTGAGTGCTGAGAACCAGCTGCCTGCCTCCTGGAGCCCCCACTACAACTGCCCAGATGTTTCCATGATGACGTCTGGCTACGCTGGACGACTATGGTCTCAGGACCTCCATCCACAGTACTGGTCCAAATATCAAGTGTGGGAGTGGCTTCAGCAGATGCTGGACATGCACCAGATAGATGCCACAGCCATACCCTTCAATAACTTTGATCTGGATGGGAGGCAGCTGTGTAGCATGACCTATCAGGACTTCACCCGCCTGACTGGATCCTTCGGGCCTATCCTCTACCAGAGTCTGACTGACCTCAGTCAGTCCAAGTGGACCGGTCAGTATGGCTCTTCAGCAGATATGTTCACATCAGGGGATATTAAAACAGAATTAGATGATCTTCCTTGCACAATCTTGTCTTTCAAGGAGGAGCCCAGCTTTTACGCCACTTCAGAGCTTTTTGACATTAAAACCCCATTTCAACCGTCTACCATGATGACCTCTCCAGCCCCCTCAAGTCCCGACACCAAAAGGTCCCACAGTCGTTCCAACCAAGTCAAAAaacacaaCCCTCGTGGGACCCATCTGTGGGAGTTCATACGCGACATCTTGTTGAACCCAGAGAGGAACCCAGGCCTCATTAAGTGGGAGGACAGGTCCGAGGGGGTGTTTCGCTTTCTAAAGTCGGAGGCAGTAGCACAGCTCTGGGGCAAAAAGAAGAacaacagcagcatgacctacgaGAAGCTCAGTCGAGCGATGAGGTATTACTACAAACGGGAGATTCTAGAGCGTGTAGACGGGCGCAGGCTGGTCTACAAGTTCGGAAGGAATGCTCGTGGTTGGAGAGAAACTGAGAAGTGA

Function

symbol description
ehf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including epithelial cell proliferation; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in liver. Orthologous to human EHF (ETS homologous factor).

NR:

description
ETS homologous factor-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17102 EHF; ETS homologous factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228150.3 False 1039 mRNA 0.52 9 13662809 13676841
XM_022672162.1 True 1141 mRNA 0.48 8 13669622 13677076
XM_022672163.1 False 903 mRNA 0.52 8 13669622 13676841

Neighbor

gene id symbol gene type direction distance location
rag1 rag1,LOC107750737,LOC107670202 coding upstream 719847 12934452 ~ 12942962 (+)
LOC103044030 LOC103044030,LOC108428802,LOC108428756 coding upstream 753748 12897785 ~ 12909061 (+)
man2a2 man2a2,LOC107750719,LOC107720774,LOC107670215 coding upstream 947151 12680106 ~ 12715658 (+)
trnar-ucg_4 NA coding upstream 1059385 12603352 ~ 12603424 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 coding upstream 1075266 12568837 ~ 12587543 (+)
pdhx pdhx coding downstream 17352 13694428 ~ 13765050 (+)
cd44 LOC106561308,LOC106573350 coding downstream 117337 13794413 ~ 13828422 (+)
fjx1 NA coding downstream 331556 14008632 ~ 14011720 (+)
trim44 trim44,LOC107716865 coding downstream 400936 14078012 ~ 14161299 (+)
ldlrad3 ldlrad3,LOC106573355 coding downstream 560963 14238039 ~ 14389321 (+)
G73337 NA non-coding upstream 25107 13637016 ~ 13637702 (+)
G73332 NA non-coding upstream 152571 13509756 ~ 13510238 (+)
G73301 NA non-coding upstream 424597 13237960 ~ 13238212 (+)
G73298 NA non-coding upstream 436854 13225671 ~ 13225955 (+)
G73292 NA non-coding upstream 504130 13157769 ~ 13158679 (+)
G73354 NA non-coding downstream 91049 13768125 ~ 13768360 (+)
G73361 NA non-coding downstream 114254 13791330 ~ 13794158 (+)
G73359 NA non-coding downstream 151643 13828719 ~ 13830765 (+)
G73404 NA non-coding downstream 245525 13922601 ~ 13923296 (+)
G73416 NA non-coding downstream 325996 14003072 ~ 14003426 (+)
LOC103043719 NA other upstream 764878 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 3035845 10272919 ~ 10626964 (+)
G72621 NA other upstream 3580669 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 3692767 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 4513390 9142899 ~ 9149419 (+)
G73533 NA other downstream 971753 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 1214458 14891534 ~ 14921003 (+)
svip svip other downstream 1895226 15572302 ~ 15577533 (+)
G74169 NA other downstream 2609600 16286676 ~ 16288329 (+)
G74649 NA other downstream 4777775 18454851 ~ 18455197 (+)

Expression


Co-expression Network