cib1 (cib1,kip1)


Basic Information

Item Value
gene id cib1
gene name cib1,kip1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14550872 ~ 14554955 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228164.3
ATTCGTTTCTATAGAAACTAGCACGTCGAGCAGGAAGAGGAAGTGTAGGTCGTGTTTGAGAAGTTTTTTTAGTCCAAAACACAAAGTAAGTTCAGTAATCGATACTTATCGATTAGCTGACCGCCAGCACGGACACTACCCGACAAACAACACCATGGGTACAGCAGCCAGTAAATTACCGAAAGATCTGTTGTCCGAGTATCAGGAGCTCACGTTTCTCACGAAGCAAGAAATTCTCCTGGCACATAAGAGATTCACTGAACTCCTGGATCGAGGAGACAGACAGCAGGCTTTCAACTCTCGTGTACCCATGACTAAAGTTCTTACTTTACCTGAGCTCAAGTCCAATCCCTTCCGAAAAAGGATCTGCAATGTTTTCTCAACGTCTGATGTAAAGGATGGGAGCTTATCCTTTGAAGACTTCTTGGATCTCCTAAGTGCCTTCAGCGATTCAGCAACGCTTGAAATCAAATCTCACTATGCGTTTAGAATCTTTGACTTCGATGATGATGGCACCCTTGATTCTGGAGATCTTGAGAAATTGGTGAACTGCCTGACTGGAGAGACAGAGGACACACGACTCACTTCTGAGGAAATGAAGCAACTTATAAACAATATTCTTGAGGAGTCAGACATCGACAAAGATGGAACAGTAAACCTTTCTGAGTTTCAGCACGTCATTTCCAGATCTCCTGACTTTGTCAGTTCATTCAAGATTGTGCTGTGAAGCGTCAGAAgcactgaaaacattttgtggtCCGATGCATTCACGACAGGACAACAGTACTTTCCTCTTTTCTTAACAGTCCTAATGTAGGTGTTAATTGACATATACTCTTATCAGTATTTCTATGCTTTTCTAATTTATAAAGAAATCTGTACATATTTTCTGCACAACCTTTCTTTACTCTAAACCTGTatttttggagatattttatatttaataaacgcATGTTGTTTCCCTACA

Function

symbol description
cib1 Predicted to enable calcium ion binding activity. Is expressed in several structures, including Kupffer's vesicle; axis; pronephric duct; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human CIB1 (calcium and integrin binding 1).
kip1 Enables microtubule motor activity. Involved in 2-micrometer plasmid partitioning; initial mitotic spindle pole body separation; and microtubule depolymerization. Located in spindle microtubule. Human ortholog(s) of this gene implicated in microcephaly with or without chorioretinopathy, lymphedema, or mental retardation. Orthologous to human KIF11 (kinesin family member 11).

NR:

description
PREDICTED: calcium and integrin-binding protein 1

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17259 CIB1; calcium and integrin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228164.3 True 967 mRNA 0.41 7 14550872 14554955

Neighbor

gene id symbol gene type direction distance location
LOC103024229 LOC108428793 coding downstream 90484 14390685 ~ 14460388 (-)
pamr1 pamr1,LOC102307280,LOC107570358 coding downstream 586846 13920173 ~ 13964026 (-)
slc1a2 slc1a2,slc1a2b,LOC107740049,LOC107570361 coding downstream 641269 13861550 ~ 13909603 (-)
LOC103022766 NA coding downstream 702730 13833553 ~ 13848142 (-)
rag2 rag2,LOC107581808,LOC107720771,LOC107673237,LOC107750738,LOC107670203 coding downstream 1601433 12944453 ~ 12949439 (-)
LOC103040849 LOC108428736,LOC104940688,LOC108274568 coding upstream 11955 14566910 ~ 14574221 (-)
LOC103041151 NA coding upstream 19840 14574795 ~ 14578518 (-)
LOC103028140 golt1bb,LOC107551388,LOC107676462,LOC108428784,LOC107754325,LOC107701063 coding upstream 59436 14614391 ~ 14619388 (-)
gpr22 gpr22,gpr22b,LOC108428781,LOC107754326,LOC107676451,LOC107561157,LOC107701065 coding upstream 85046 14640001 ~ 14649251 (-)
LOC111193055 NA coding upstream 132734 14687689 ~ 14690107 (-)
G73509 NA non-coding downstream 82731 14467622 ~ 14468141 (-)
G73491 NA non-coding downstream 273766 14276679 ~ 14277106 (-)
G73434 NA non-coding downstream 478834 14070499 ~ 14072038 (-)
G73432 NA non-coding downstream 512504 14038069 ~ 14038368 (-)
G73429 NA non-coding downstream 543723 14006752 ~ 14007149 (-)
G73540 slc25a3,LOC107569351,LOC107732290 non-coding upstream 42996 14597951 ~ 14605960 (-)
G73606 NA non-coding upstream 120926 14675881 ~ 14676858 (-)
G73617 dus2,LOC107555686 non-coding upstream 190215 14745170 ~ 14748658 (-)
G73622 NA non-coding upstream 201944 14756899 ~ 14757248 (-)
G73605 NA non-coding upstream 242400 14797355 ~ 14800633 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 5336 14542196 ~ 14545536 (-)
G73172 NA other downstream 1929516 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 1985894 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2499383 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 3005626 11520887 ~ 11545246 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 154103 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 568859 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 826374 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 1203348 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1912134 16467089 ~ 16470323 (-)

Expression


Co-expression Network