LOC103025904 (metap2,metap2b,LOC108428789,LOC108275287,LOC107569354,LOC107701059)


Basic Information

Item Value
gene id LOC103025904
gene name metap2,metap2b,LOC108428789,LOC108275287,LOC107569354,LOC107701059
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14556020 ~ 14562537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228167.3
CAAGTCTGTGCTGCGGGGCGGCCCTGCTGCTGGTGGATCATGGCGGATGAGGAGTTGACAGAGAAGGGAACTCCGAAAGTGGAGATTCTTCAGAACGGAGATGCGCACAAGTTAAAGGAGGAGGGGGAGCAGGTGGAGGAGGCTTctaagaagaagaggaaaaagaagaagaagagtaaaGCGGCGGCTGAAGCAGTGAACAATGATGCTGAAGAAGCAGCTGACATCAATAAGGTGACGAAACAGTTGGAGCAGCAGGCCTTGGATGACCAAGAAAAGGAAGATGACGGCGAGGATGATGGAGAGGAAGGAGATTCAGctggaaagaagaagaaaaagaagaagaaaaagaaaggatCCAAGGGACAGACAGATCCTCCATCTATTCCTATATGTGAGCTTTATCCAAGTGGAGTTTTCACCAAGGGACAAGAATGTGAATATCCAACTGTGCAAGACGGCCGTAGTGCTACATGGAGAACAAGCATTGAGGAGAGGAGGGTGTTGGACAAGGCCAATGAGGAAATGTGGAATGACTTCAGGCAGGCAGCAGAAGCTCACCGGCAAGTCAGGAAGTACGTCATGAGCTGGATTAAACCAGGCATGACTATGATTGAGATTTGTGAGAAACTGGAGGACTGCTCTAGAAAACTAATCAAAGAGAATCGTCTAAATGCTGGTCTTGCTTTTCCTACTGGTTGTTCCCTCAACCACTGTGCTGCACACTACACCCCCAACGCTGGGGATCCCACGGTGCTCCAGTATGATGATGTCTGCAAGATTGACTTCGGCACGCACATTAATGGAAGAATCATTGACTGTGCCTTTACTGTCACCTTCAACCCAAAGTATGATAAACTGCTAGAAGCTGTTAAAGATGCTACAAATACTGGAATTAAGTGTGCAGGAATAGATGTCCGTTTGTGTGATATTGGGGAATCCATTCAGGAAGTCATGGAGTCTTACGAGGTTGAGCTAGATGGCAAAACGTATCAAGTGAAGCCAATCCGGAATCTCAATGGCCACTCTATTGGACAGTACAGAATACATGCTGGCAAGACTGTCCCCATTGTTAAGGGTGGTGAGGCAACCAGAATGGAGgaggGAGAGGTGTATGCCATCGAGACCTTTGGAAGCACCGGAAAAGGCATGGTGCATGATGACATGGAGTGCTCACATTACATGAAAAACTTTGAAGTCGGACATGTGCCAATCAGACTCCCAAGGGCCAAGCACCTCCTGAATGTTGTTAATGAGAATTTCGGCACATTGGCATTTTGCCGCCGCTGGCTAGACCGTCTGGGTGAAACAAAGTACCTGATGGCACTAAAGAACCTGTGCGACCTGGGCATCATTGACCCCTACCCGCCTCTGTGTGACACCAAAGGCTGCTACACTGCTCAATTTGAGCACACCATCCTACTGAGGCCAACCTGCAAGGAGGTGGTCAGCCGTGGCGATGATTATTAGAGCTTATGCTCACCAATTTCTCAAAATTACGGACGCACTTGTGTGTTGAGTTGGGTGGGAGGTAAATGCTTGGCTAGCCTGTGCCTGTCACGTTGACATTTATGGTATTTCTGGAGGATTTGGGGCTGTGAGACTAAGAGGTTTGTCTGTTGGCATTCTGTATGCTTTTGGAGGTTCAGGACAGAGAGTTTTGATCTCCTCACCCTCCAAATTAGCAAGCgttaaattttgaaaaattggtGGACGTTTCTTAATGTAAGCGCACCATGTTAGCCCAGGGAGGTCTAATGTTGAGCTGTATTACACCACCATGCAAAAAAGTATTTAGAGGGGTGACGAGAAGGTAATGTTCACTGATTCTCTATTTTTCCTTTCCTTCATATTGGGAACAGCTTTGTTCCTCTGCAGCTTTCAGTTTTAGTcttatttgattaaattttgGATGCATTGATAGGATGGTGCAGAAattggattttttaaaattccTGTTCACAGGAATAAGCCAGTATAACAGTGTAGATACATCTTAAACATGCAGCTGTGCTTTGTTGCCTTTACGGAAAAAGTAATAATGCTTTCGTCACTTGGACAACATCTGGCGATGACTCATAATAATCTTGCATGTTTGGGCTGAGCTGTGTTTTGAGCTGAATTCAGTCACTTCTCTGGATAAAGCACaatgtagtgttttattttgaattacaAATAAACTTTGTAAGAAATGATTACTTTCAACAGTTTAGTTGAACTTGTCTTATCTCTCAGCATTGGAAACAAgctataataaaatgtgaaatttaa
>XM_007228168.3
CAAGTCTGTGCTGCGGGGCGGCCCTGCTGCTGGTGGATCATGGCGGATGAGGAGTTGACAGAGAAGGGAACTCCGAAAGTGGAGATTCTTCAGAACGGAGATGCGCACAAGTTAAAGGAGGAGGGGGAGCAGGTGGAGGAGGCTTctaagaagaagaggaaaaagaagaagaagagtaaaGCGGCGGCTGAAGTGAACAATGATGCTGAAGAAGCAGCTGACATCAATAAGGTGACGAAACAGTTGGAGCAGCAGGCCTTGGATGACCAAGAAAAGGAAGATGACGGCGAGGATGATGGAGAGGAAGGAGATTCAGctggaaagaagaagaaaaagaagaagaaaaagaaaggatCCAAGGGACAGACAGATCCTCCATCTATTCCTATATGTGAGCTTTATCCAAGTGGAGTTTTCACCAAGGGACAAGAATGTGAATATCCAACTGTGCAAGACGGCCGTAGTGCTACATGGAGAACAAGCATTGAGGAGAGGAGGGTGTTGGACAAGGCCAATGAGGAAATGTGGAATGACTTCAGGCAGGCAGCAGAAGCTCACCGGCAAGTCAGGAAGTACGTCATGAGCTGGATTAAACCAGGCATGACTATGATTGAGATTTGTGAGAAACTGGAGGACTGCTCTAGAAAACTAATCAAAGAGAATCGTCTAAATGCTGGTCTTGCTTTTCCTACTGGTTGTTCCCTCAACCACTGTGCTGCACACTACACCCCCAACGCTGGGGATCCCACGGTGCTCCAGTATGATGATGTCTGCAAGATTGACTTCGGCACGCACATTAATGGAAGAATCATTGACTGTGCCTTTACTGTCACCTTCAACCCAAAGTATGATAAACTGCTAGAAGCTGTTAAAGATGCTACAAATACTGGAATTAAGTGTGCAGGAATAGATGTCCGTTTGTGTGATATTGGGGAATCCATTCAGGAAGTCATGGAGTCTTACGAGGTTGAGCTAGATGGCAAAACGTATCAAGTGAAGCCAATCCGGAATCTCAATGGCCACTCTATTGGACAGTACAGAATACATGCTGGCAAGACTGTCCCCATTGTTAAGGGTGGTGAGGCAACCAGAATGGAGgaggGAGAGGTGTATGCCATCGAGACCTTTGGAAGCACCGGAAAAGGCATGGTGCATGATGACATGGAGTGCTCACATTACATGAAAAACTTTGAAGTCGGACATGTGCCAATCAGACTCCCAAGGGCCAAGCACCTCCTGAATGTTGTTAATGAGAATTTCGGCACATTGGCATTTTGCCGCCGCTGGCTAGACCGTCTGGGTGAAACAAAGTACCTGATGGCACTAAAGAACCTGTGCGACCTGGGCATCATTGACCCCTACCCGCCTCTGTGTGACACCAAAGGCTGCTACACTGCTCAATTTGAGCACACCATCCTACTGAGGCCAACCTGCAAGGAGGTGGTCAGCCGTGGCGATGATTATTAGAGCTTATGCTCACCAATTTCTCAAAATTACGGACGCACTTGTGTGTTGAGTTGGGTGGGAGGTAAATGCTTGGCTAGCCTGTGCCTGTCACGTTGACATTTATGGTATTTCTGGAGGATTTGGGGCTGTGAGACTAAGAGGTTTGTCTGTTGGCATTCTGTATGCTTTTGGAGGTTCAGGACAGAGAGTTTTGATCTCCTCACCCTCCAAATTAGCAAGCgttaaattttgaaaaattggtGGACGTTTCTTAATGTAAGCGCACCATGTTAGCCCAGGGAGGTCTAATGTTGAGCTGTATTACACCACCATGCAAAAAAGTATTTAGAGGGGTGACGAGAAGGTAATGTTCACTGATTCTCTATTTTTCCTTTCCTTCATATTGGGAACAGCTTTGTTCCTCTGCAGCTTTCAGTTTTAGTcttatttgattaaattttgGATGCATTGATAGGATGGTGCAGAAattggattttttaaaattccTGTTCACAGGAATAAGCCAGTATAACAGTGTAGATACATCTTAAACATGCAGCTGTGCTTTGTTGCCTTTACGGAAAAAGTAATAATGCTTTCGTCACTTGGACAACATCTGGCGATGACTCATAATAATCTTGCATGTTTGGGCTGAGCTGTGTTTTGAGCTGAATTCAGTCACTTCTCTGGATAAAGCACaatgtagtgttttattttgaattacaAATAAACTTTGTAAGAAATGATTACTTTCAACAGTTTAGTTGAACTTGTCTTATCTCTCAGCATTGGAAACAAgctataataaaatgtgaaatttaa

Function

symbol description
metap2b Predicted to enable metal ion binding activity and metalloaminopeptidase activity. Acts upstream of or within Wnt signaling pathway; definitive hemopoiesis; and hematopoietic stem cell differentiation. Predicted to be located in cytoplasm. Is expressed in several structures, including digestive system; heart tube; hematopoietic system; pronephric duct; and trunk. Orthologous to human METAP2 (methionyl aminopeptidase 2).
metap2 Enables aminopeptidase activity and metalloexopeptidase activity. Involved in N-terminal protein amino acid modification; peptidyl-methionine modification; and protein processing. Located in cytosol and plasma membrane.

NR:

description
methionine aminopeptidase 2 isoform X1

GO:

id name namespace
GO:0070084 protein initiator methionine removal biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0006508 proteolysis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005737 cytoplasm cellular_component
GO:0070006 metalloaminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01265 map; methionyl aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228167.3 True 2271 mRNA 0.45 11 14556020 14562537
XM_007228168.3 False 2268 mRNA 0.45 11 14556020 14562537

Neighbor

gene id symbol gene type direction distance location
rccd1 NA coding upstream 5100 14546797 ~ 14550920 (+)
ldlrad3 ldlrad3,LOC106573355 coding upstream 166699 14238039 ~ 14389321 (+)
trim44 trim44,LOC107716865 coding upstream 394721 14078012 ~ 14161299 (+)
fjx1 NA coding upstream 544300 14008632 ~ 14011720 (+)
cd44 LOC106561308,LOC106573350 coding upstream 727598 13794413 ~ 13828422 (+)
LOC103026417 LOC108428785 coding downstream 28066 14590603 ~ 14595936 (+)
slc25a3 slc25a3,slc25a3b,LOC107732290 coding downstream 35428 14597965 ~ 14605957 (+)
LOC103028647 ldhbb,LOC103028647,LOC108428782,LOC108275055,LOC105895664,LOC103366875,LOC106573069,LOC107744904,LOC107659842,LOC107589975,LOC107586539 coding downstream 45052 14607589 ~ 14614390 (+)
slc35b4 slc35b4,s35b4,LOC106561668 coding downstream 57934 14620471 ~ 14626071 (+)
LOC103027493 LOC108428780 coding downstream 64675 14627212 ~ 14637073 (+)
G73514 dynlrb2,LOC103025073,LOC106573385 non-coding upstream 10507 14542198 ~ 14545513 (+)
G73468 NA non-coding upstream 231397 14323965 ~ 14324623 (+)
G73464 NA non-coding upstream 286296 14266776 ~ 14269724 (+)
G73443 NA non-coding upstream 390364 14164794 ~ 14165656 (+)
G73414 NA non-coding upstream 391680 14163344 ~ 14164340 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding downstream 51881 14614418 ~ 14619324 (+)
G73527 NA non-coding downstream 75410 14637947 ~ 14638553 (+)
G73532 NA non-coding downstream 83906 14646443 ~ 14647562 (+)
G73566 NA non-coding downstream 113336 14675873 ~ 14676794 (+)
G73598 NA non-coding downstream 281908 14844445 ~ 14844664 (+)
LOC103043719 NA other upstream 1658089 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 3929056 10272919 ~ 10626964 (+)
G72621 NA other upstream 4473880 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4585978 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 5406601 9142899 ~ 9149419 (+)
G73533 NA other downstream 86292 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 328997 14891534 ~ 14921003 (+)
svip svip other downstream 1009765 15572302 ~ 15577533 (+)
G74169 NA other downstream 1724139 16286676 ~ 16288329 (+)
G74649 NA other downstream 3892314 18454851 ~ 18455197 (+)

Expression


Co-expression Network