LOC103026417 (LOC108428785)


Basic Information

Item Value
gene id LOC103026417
gene name LOC108428785
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14590603 ~ 14595936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228169.3
AGACTAGCATATGATATTTAACAGGGGATGGGATATTATCTTTTCTCATGTGGGAGAGGCTACACTTTAGGATTTAGGATTAGTGTATGTGTATAAACTGAGAACCTAGCGTTAGTTAGCTATCTATCTTTGCTCAGGAACCCTCCGCTCTCCTtcgcttcttcttcttcctctcggCGCCTCCATCGCGCTCTTTGTTGTGGCAGACGGCTGACATTTGTCCTCCACCAATAGGAGAGCGCCTTATTGAGCGGAGGCTGCCAATAACGTGCGACCTCATTGGGAGGGGGCGGCTGTGGCGAGAGGCGCGCAGGCGATCGGGATACGGTAAAGCAGCGAGCGGGGCATTTGTTCTCGATTCCGGTTGGAAAAGTGAAGCAAACTCCGCGCCTTAGCTGCAGTATTTGGCGAGGCGTCGGTGCGGGGAGTCGGTGTGAGGCGGTATCCGGGAGTAATCGGTAGCTGAGGTCGTCGTGTGAAGCGCGGGAACACATTCAAACCCGCCCGCCGATCTGACGTGTGTCCGCGGAGCCGCGCTGCGGGACTCGGACCCACACCGGAGAACtagcttagcgcggttagcactgttagctgaCCCCGCTAGCTTTAGATAACAGCCGGGGGAGAACTCATATTTACACAGTTCTGCCTTCAGTTCAGGGCTCTCTCCTGCCCGCCCTGGCCCGGTCCtgagctaaagctaagctaacttggctaactaactagctaacaaacaaacaaagcatgGCGGAATTCTTGGAAGACCCGTCGGTCCTCACGAAGGAGAAGCTGAAGAGTGAGCTGCTCGCCAACGATGTTCCTCTGCCCAGCGGAGAGCACAAGAAAGAGGTGTATATCCAGCTGTACCTGAAGAACCTCACCGCTCAGAACAAGAGGAAAGCTCCCCCAGCGGACACCTTCTCCAGCGACGAGGAGATCACACCAGTGCTCTCCAACAGGAGCCGCTCTGGAAAGAAAGCGACAAAAAAGACGGATAAAGCTCGAAAAGAGGAGGTGGATGTTTTCAGTCTTACTGATGAAGACCTAAAGGTTCAGCTGTTAAAGTATGGAATCAATCCAGGTCCCATTGTTGCTTCAACTCGTAAACTGTATGAGAAGAGACTTCAAAAGCTGTTGGATCAGCCGCCATCGGAGACCACACCACCTGAACCAGAGACTGCAGTTCCAGAGACGGTCACTCTGAAGGCTGATGGAAATCAGAACGGCAACACAAACTCTGTGGAGGATCAGTACAGTGACAAGGATGAAGcTGCAGATCCAGAACCAGAGCCAGTTCCCGTAGCCAGCAAACCAGTGAGAAGCAGAGGAAAGACACCAGTCACCACTAGGACAAGCAGCAGACAACGCAGCAAGcTGGTGGAGGAGACACAGCAGGCAGATTCTGTGGATGGACGTGATCTTTTAAAAGATTTGTTCCCTAATGAGCCTGCTACACCAACAGGCATTACTGCAACTTGCCGAAGGCCAATCCATGGAGCAGCTGGACGCCCAGTGAGGCCAATGGACCTTTGGCCGGAGGAGTCCCTCCTACAGAAAAGTGtgtacaccaccaccactaccaccaccaaaTCATCCCTCATGGACAGTCGTAGTGCTCCATCTTCTGTCACTCCTCCTGCTCGTCGCTCCTTCTCCATCTGGCTGAAACTTCTGGTGTTTCTCACATTAGTGGGCACTCTTTTCTACATCTTCCAGAATGTGACCCCTGAGCAGATTAACACCTGCAAGCTCTTTATACAGGACAGTGTGGTCAATCCACTACTCAGTGCTATTGGCGTCGTTGATCAGGAAGAGAGTGGTGGTGGCAAATAAGCACTGCCAGTGTGTCTCCAGAACGTGTGCATGAGCTGTCTTTACCCTCAGACTTTAGTTTCAACCCCATACCTGGTTGGTTGAAAAGTCAACATTTTTGCAGGGTTTTTGGTTATCGCAGTACAACTTCGCAGTCGTGTCtgaaaatacttgtttttaagtAGTCTTTAAATTTTGTGTGAATTGTGTTTTCatcatgctttttttgtttttgctgttttgtagCAGGTAATATGAGAGAGGAAGGAATAGTATTTGTCTAGCCTTGTATCATGGTGAACAGTTGCCAGTATGTCAGTAGCACTTCAAGGACTTCCACCCCCTATGAAGACACATGTTTTGAAAATCAACAAACCTAAAATGGTTCAGTGTGTGTTGAACACGGGTTGTATGAGCCAAATGTGAATTTAACATACCATACCTGTTAAAAGGCAGAACTTGTGTGCATTGGACTTGAGTTACAATTACTGTATGTACATAAAATTTGAGGTTTTAGGTTATTTTACTCTGACAGGTTCAGGACAGCAAAATGTCTTGTTTGGAAATAGTATCTTTTACTAAGCAGTTAGCTTCCATCTAAGTGTATTGTAGCATTGAATTGTGCTCAAACTAATAGACTACCAGGTCAGTTATGCAGTTTGCTTTTAGTGCCACATGAAGTTCTGGTCTTCACCAGAGTCTGGCCCACAGCTCTGCTCTCTCAGGCAATAGATGGCGTTTCAGTGCCGTTAACTGGTTCATTTTGTGATAGATGACGGCTCATTTAGTGTGTCATAATATAGTCGTCATGTGATGTGAGTATATAGCTTTGGAAATGCTTAAATCTGTCATGACACTTTCCATTGTCAAAAaacactttgttttttgttattcctCTTCTATTTTGCCCCTGGTCAAACACTGGTTATCTGGCCAAAATATGAATTGATTTATTTGCTCTAATTTAAAAGTTGGCATTAAGATACATTTGCCAAGCATGAAATTCCTTTTACCTTTTCAATCAGATGAATACATTTGTGGTGACCTTTTGTTCTGaagttttcttttatattttactacttggaattaaagtgcttttgcttttttaactGCAATATTTTTCTAATATCTCTTCTTAAACAAGTAAACTGAGGGGAATGAGATGTGTACATCTCAACAAATGCTGTCAGCATTTGTTTCTACCTGCTTTCCAAAGGCAGAAATGGTTTTTAAAAATGGTGAAATTTGCACTTTGTCACAGGGCAGCTAACAGGTAAAAAGGTAAATATGAAATTTGGACGTTTTCCTTCTGATTAAATTGATTGTTTTATCATTTGGTTGAATACAGTAATGGtgtgaaataaaacatgaaagacAGCTTAA

Function

NR:

description
PREDICTED: lamina-associated polypeptide 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228169.3 True 3195 mRNA 0.45 6 14590603 14595936

Neighbor

gene id symbol gene type direction distance location
LOC103025904 metap2,metap2b,LOC108428789,LOC108275287,LOC107569354,LOC107701059 coding upstream 28066 14556020 ~ 14562537 (+)
rccd1 NA coding upstream 39683 14546797 ~ 14550920 (+)
ldlrad3 ldlrad3,LOC106573355 coding upstream 201282 14238039 ~ 14389321 (+)
trim44 trim44,LOC107716865 coding upstream 429304 14078012 ~ 14161299 (+)
fjx1 NA coding upstream 578883 14008632 ~ 14011720 (+)
slc25a3 slc25a3,slc25a3b,LOC107732290 coding downstream 2029 14597965 ~ 14605957 (+)
LOC103028647 ldhbb,LOC103028647,LOC108428782,LOC108275055,LOC105895664,LOC103366875,LOC106573069,LOC107744904,LOC107659842,LOC107589975,LOC107586539 coding downstream 11653 14607589 ~ 14614390 (+)
slc35b4 slc35b4,s35b4,LOC106561668 coding downstream 24535 14620471 ~ 14626071 (+)
LOC103027493 LOC108428780 coding downstream 31276 14627212 ~ 14637073 (+)
dus2 dus2,LOC105922392,LOC108229071 coding downstream 149332 14745268 ~ 14754530 (+)
G73514 dynlrb2,LOC103025073,LOC106573385 non-coding upstream 45090 14542198 ~ 14545513 (+)
G73468 NA non-coding upstream 265980 14323965 ~ 14324623 (+)
G73464 NA non-coding upstream 320879 14266776 ~ 14269724 (+)
G73443 NA non-coding upstream 424947 14164794 ~ 14165656 (+)
G73414 NA non-coding upstream 426263 14163344 ~ 14164340 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding downstream 18482 14614418 ~ 14619324 (+)
G73527 NA non-coding downstream 42011 14637947 ~ 14638553 (+)
G73532 NA non-coding downstream 50507 14646443 ~ 14647562 (+)
G73566 NA non-coding downstream 79937 14675873 ~ 14676794 (+)
G73598 NA non-coding downstream 248509 14844445 ~ 14844664 (+)
LOC103043719 NA other upstream 1692672 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 3963639 10272919 ~ 10626964 (+)
G72621 NA other upstream 4508463 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4620561 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 5441184 9142899 ~ 9149419 (+)
G73533 NA other downstream 52893 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 295598 14891534 ~ 14921003 (+)
svip svip other downstream 976366 15572302 ~ 15577533 (+)
G74169 NA other downstream 1690740 16286676 ~ 16288329 (+)
G74649 NA other downstream 3858915 18454851 ~ 18455197 (+)

Expression


Co-expression Network