LOC103027493 (LOC108428780)


Basic Information

Item Value
gene id LOC103027493
gene name LOC108428780
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14627212 ~ 14637073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228173.3
AAATGTGTTGTTATATAGTGTTTGTAAGCTGTAGACACAGAAGGCACGTTGGGATATTGGGATATTGACCCCAGTGTGTTGACATTAGATTTGACCCCATAATTCCATGGGGGGACATGTTACCCTACACCACTACTAGCAGGGTCCTCCTCAGTGAGGAACATGCAGTAGctatgtatagtgtgttgttTTTTGGACTGAGAAAGACTCGCTCCAGTGAGTGTGAAAGATCTGCTGCCCTCAGGCCCATTCCTGCTGGAGACCAATACACACAGTTATTACAGGCGCTCAGCTCACTCACCCAATGGGGAAAGCTTTTATAGAGAGGGGGGGCAGGGCAGGGTCTGGGGCTCCACTCTGGGTGCAGGACCTGAATGTGTGCAGTGTCAAAATCTCAACACTTTTAATCTTATGTTGAGGTACAGAGGGACCTGCTGACCGCCGCTTCACACATAACATGGGGGGAAACAGCAGCTCGAGACTCGAGGATGAAGAGGTTATTACAGTGGTGAAGGGCATCCGGCTAACAGATCGTGTGATTGATCGTATGAAGGAATCTCCTAAAGCAGCAAAACAACGCCCTCAATCAAATAAACAAGCACATCCACCTCTGAATCTTGGCGTGCCTTGGTCCCCTACTGAGCCACTGGGACACATATTGCCTCATCATCCTTCTTATGCCAGTTCTCTGGTGACACCACCTCTCCAAGTGCCTGTACCGTTTGCTTCTGTGAGTCAGGAGACTCCTGCACCACCTCCGCCTGCAGCTCCATCTACAGTACCTACTGTAGAAGCAGTTTTGTCTTCTCCTTCATCtcaggaaagtgcagcaacttcTCAGCATACAGACTCCTTAAGAGGAACTACAGCTGTCCCTGCTGGTACTGGAGTCACACCTCCTTCATCACATGATGAATCCATAGTCCCACCTGCAACTACTGAGTCCACAGCTGTACCTGTTGAGCCTTTCCCTACAAACACACTTGCTGAAGAAATTGCTGCATCTAAAACTCCATCTCCTGATGCACCATTCACTGCACCAGCACCAGTGCCTCCTCCTCCTGTTACAGCTGAATCTGTGGAGGAGCTAGCACCCCCTCAGTCCTCTTCTACACTGGTCCTACCTTCTGAACTACCCTTTATGGGGCAGAGGGGACCAACTCCCACTGAAGAGACTTCAGCTCCACAAGCTTCTGCTCCTACTGCAGAGCCTGATGTTCTCTCTATGCTGACTCCTCTTACTGATACGCTAACTCCACTAGCCTCTCCATCATCACCCCAGGCTGTAGTAAATGAGGAGGAACTGAGGAAGCAGATCAGGGATGAACTGCAGAAACAGCTGGAAGAAGAGATGAAGACAGCCAAGCTGAAGATTCAGCAGCAATTGGAGGAGGAGAAAGCTAAGGCGGAGGCAGAGGCCGGGGCCAAAGCTCAGCTGCAGATCCAGGCAGAGGTTCAGAAGGTTCTGGAAGGAGAGCAACAAGCCCTTCAGCAGTCTCTAAAAGATGCTATTATGCAGGAGCGCATGAATACTGAGGATGAGCGTCTTGTAGCTCAGTATTATTGGATGGAGAGAAAGATTCAGAAGGTggaggaaagagaaaaacaactGGAAAAGCAGGATATACTGTACAGAAATCAGATTACCAAACTGGAGGAGAAAACTGCACAGTTCACCAGAGTTACAGCAGAAAGCTTCAGAAAGGGTTTGGAGGACACTCACAATCGCTTCAAGAGGTCCCAGATAAAGCCAGTTTGCTCAGAGCTGCAGAGTGAGATTTTGAAATGCTACATGATGAATACAGGCAAGACTCTGACTTGCTCCAACATTGCTTCGCTCTATATCCAGTGTGTGGACAACGCTAAACAGaacaaAAAGGTGAGCACAGGTGGTTAATAACTGATTCCCAAGATCAACAGAAATATTATCATGAAATGAGAGCACACACCACCTGAACAAGAAGAGCCTTACTACCAGCTAGACCTTATCTTCAATCTGTGAGTGAGAGTGTTCCTCTCTCTACTGCAAGAATGTGAAGAAACTGGCCAAGGAACAACACTACAGATATTTTCATACGGATTATCTGCATGACAATGCAATGCAAACAAGGCTTATTCTTTACTTTCCACCCACCAGTCTGAGGAAATATTTTGACACTGAAACTACACTTCCAGTCAGCAGGAAGAATAAAGAACcgtgcctttttttcttttactttcatCACGGCTGAAAGAGCTGAGCCGAAAgcctattttttaaattcaagaGATGTGAGAGATATTGCGTGCCAAGGAAGGAAATGAAATACCTTCATTAAGGAGAGTAAAAATCCTGTCATTTTTCTCTGTGAAA
>XM_022672172.1
TAAAATGTGTTGTTATATAGTGTTTGTAAGCTGTAGACACAGAAGGCACGTTGGGATATTGGGATATTGACCCCAGTGTGTTGACATTAGATTTGACCCCATAATTCCATGGGGGGACATGTTACCCTACACCACTACTAGCAGGGTCCTCCTCAGTGAGGAACATGCAGTAGctatgtatagtgtgttgttTTTTGGACTGAGAAAGACTCGCTCCAGTGAGTGTGAAAGATCTGCTGCCCTCAGGCCCATTCCTGCTGGAGACCAATACACACAGTTATTACAGGCGCTCAGCTCACTCACCCAATGGGGAAAGCTTTTATAGAGAGGGGGGGCAGGGCAGGGTCTGGGGCTCCACTCTGGGTGCAGGACCTGAATGTGTGCAGTGTCAAAATCTCAACACTTTTAATCTTATGTTGAGGTACAGAGGGACCTGCTGACCGCCGCTTCACACATAACATGGGGGGAAACAGCAGCTCGAGACTCGAGGATGAAGAGGTTATTACAGTGGTGAAGGGCATCCGGCTAACAGATCGTGTGATTGATCGTATGAAGGAATCTCCTAAAGCAGCAAAACAACGCCCTCAATCAAATAAACAAGCACATCCACCTCTGAATCTTGGCGTGCCTTGGTCCCCTACTGAGCCACTGGGACACATATTGCCTCATCATCCTTCTTATGCCAGTTCTCTGGTGACACCACCTCTCCAAGTGCCTGTACCGTTTGCTTCTGTGAGTCAGGAGACTCCTGCACCACCTCCGCCTGCAGCTCCATCTACAGTACCTACTGTAGAAGCAGTTTTGTCTTCTCCTTCATCtcaggaaagtgcagcaacttcTCAGCATACAGACTCCTTAAGAGGAACTACAGCTGTCCCTGCTGGTACTGGAGTCACACCTCCTTCATCACATGATGAATCCATAGTCCCACCTGCAACTACTGAGTCCACAGCTGTACCTGTTGAGCCTTTCCCTACAAACACACTTGCTGAAGAAATTGCTGCATCTAAAACTCCATCTCCTGATGCACCATTCACTGCACCAGCACCAGTGCCTCCTCCTCCTGTTACAGCTGAATCTGTGGAGGAGCTAGCACCCCCTCAGTCCTCTTCTACACTGGTCCTACCTTCTGAACTACCCTTTATGGGGCAGAGGGGACCAACTCCCACTGAAGAGACTTCAGCTCCACAAGCTTCTGCTCCTACTGCAGAGCCTGATGTTCTCTCTATGCTGACTCCTCTTACTGATACGCTAACTCCACTAGCCTCTCCATCATCACCCCAGGCTGTAGTAAATGAGGAGGAACTGAGGAAGCAGATCAGGGATGAACTGCAGAAACAGCTGGAAGAAGAGATGAAGACAGCCAAGCTGAAGATTCAGCAGCAATTGGAGGAGGAGAAAGCTAAGGCGGAGGCAGAGGCCGGGGCCAAAGCTCAGCTGCAGATCCAGGCAGAGGTTCAGAAGGTTCTGGAAGGAGAGCAACAAGCCCTTCAGCAGTCTCTAAAAGATGCTATTATGCAGGAGCGCATGAATACTGAGGATGAGCGTCTTGTAGCTCAGTATTATATTCAGAAGGTggaggaaagagaaaaacaactGGAAAAGCAGGATATACTGTACAGAAATCAGATTACCAAACTGGAGGAGAAAACTGCACAGTTCACCAGAGTTACAGCAGAAAGCTTCAGAAAGGGTTTGGAGGACACTCACAATCGCTTCAAGAGGTCCCAGATAAAGCCAGTTTGCTCAGAGCTGCAGAGTGAGATTTTGAAATGCTACATGATGAATACAGGCAAGACTCTGACTTGCTCCAACATTGCTTCGCTCTATATCCAGTGTGTGGACAACGCTAAACAGaacaaAAAGGTGAGCACAGGTGGTTAATAACTGATTCCCAAGATCAACAGAAATATTATCATGAAATGAGAGCACACACCACCTGAACAAGAAGAGCCTTACTACCAGCTAGACCTTATCTTCAATCTGTGAGTGAGAGTGTTCCTCTCTCTACTGCAAGAATGTGAAGAAACTGGCCAAGGAACAACACTACAGATATTTTCATACGGATTATCTGCATGACAATGCAATGCAAACAAGGCTTATTCTTTACTTTCCACCCACCAGTCTGAGGAAATATTTTGACACTGAAACTACACTTCCAGTCAGCAGGAAGAATAAAGAACcgtgcctttttttcttttactttcatCACGGCTGAAAGAGCTGAGCCGAAAgcctattttttaaattcaagaGATGTGAGAGATATTGCGTGCCAAGGAAGGAAATGAAATACCTTCATTAAGGAGAGTAAAAATCCTGTCATTTTTCTCTGTGAAA

Function

NR:

description
PREDICTED: fibrous sheath CABYR-binding protein-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228173.3 True 2353 mRNA 0.47 9 14627214 14637073
XM_022672172.1 False 2340 mRNA 0.47 8 14627212 14637073

Neighbor

gene id symbol gene type direction distance location
slc35b4 slc35b4,s35b4,LOC106561668 coding upstream 1141 14620471 ~ 14626071 (+)
LOC103028647 ldhbb,LOC103028647,LOC108428782,LOC108275055,LOC105895664,LOC103366875,LOC106573069,LOC107744904,LOC107659842,LOC107589975,LOC107586539 coding upstream 12822 14607589 ~ 14614390 (+)
slc25a3 slc25a3,slc25a3b,LOC107732290 coding upstream 21255 14597965 ~ 14605957 (+)
LOC103026417 LOC108428785 coding upstream 31276 14590603 ~ 14595936 (+)
LOC103025904 metap2,metap2b,LOC108428789,LOC108275287,LOC107569354,LOC107701059 coding upstream 64675 14556020 ~ 14562537 (+)
dus2 dus2,LOC105922392,LOC108229071 coding downstream 108195 14745268 ~ 14754530 (+)
LOC103030248 NA coding downstream 120250 14757323 ~ 14775204 (+)
amfr amfr,LOC107566269,LOC107679970,LOC107752457,LOC107723982,LOC107659867,LOC107555700 coding downstream 139638 14776711 ~ 14786908 (+)
LOC103031607 LOC108274970,LOC108428766 coding downstream 151694 14788767 ~ 14797233 (+)
LOC103031298 gpia,gpi,LOC108428767,LOC108274969,LOC107679975 coding downstream 164645 14801718 ~ 14812498 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding upstream 7888 14614418 ~ 14619324 (+)
G73514 dynlrb2,LOC103025073,LOC106573385 non-coding upstream 81699 14542198 ~ 14545513 (+)
G73468 NA non-coding upstream 302589 14323965 ~ 14324623 (+)
G73464 NA non-coding upstream 357488 14266776 ~ 14269724 (+)
G73443 NA non-coding upstream 461556 14164794 ~ 14165656 (+)
G73527 NA non-coding downstream 874 14637947 ~ 14638553 (+)
G73532 NA non-coding downstream 9370 14646443 ~ 14647562 (+)
G73566 NA non-coding downstream 38800 14675873 ~ 14676794 (+)
G73598 NA non-coding downstream 207372 14844445 ~ 14844664 (+)
G73710 NA non-coding downstream 486799 15123872 ~ 15126987 (+)
LOC103043719 NA other upstream 1729281 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4000248 10272919 ~ 10626964 (+)
G72621 NA other upstream 4545072 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4657170 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 5477793 9142899 ~ 9149419 (+)
G73533 NA other downstream 11756 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 254461 14891534 ~ 14921003 (+)
svip svip other downstream 935229 15572302 ~ 15577533 (+)
G74169 NA other downstream 1649603 16286676 ~ 16288329 (+)
G74649 NA other downstream 3817778 18454851 ~ 18455197 (+)

Expression


Co-expression Network